Formal description of a DNA oriented computer language. - J. L. Schroeder; Frederick R. Blattner (Nucleic Acids Res., 1982)

A computer package for DNA sequence analysis. - Frederick R. Blattner; J. L. Schroeder (Nucleic Acids Res., 1984)

Personal access to sequence databases on personal computers. - P. E. Doggett; Frederick R. Blattner (Nucleic Acids Res., 1986)

Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. - Heidi J. Sofia; Valerie Burland; Donna L. Daniels; Guy Plunkett III; Frederick R. Blattner (Nucleic Acids Res., 1994)

Improving the Quality of Automatic DNA Sequence Assembly Using Fluorescent Trace-Data Classifications. - Carolyn F. Allex; Schuyler F. Baldwin; Jude W. Shavlik; Frederick R. Blattner (ISMB, 1996)

Increasing Consensus Accuracy in DNA Fragment Assemblies by Incorporating Fluorescent Trace Representations. - Carolyn F. Allex; Schuyler F. Baldwin; Jude W. Shavlik; Frederick R. Blattner (ISMB, 1997)

Neural network input representations that produce accurate consensus sequences from DNA fragment assemblies. - Carolyn F. Allex; Jude W. Shavlik; Frederick R. Blattner (Bioinform., 1999)

RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12. - Heladia Salgado; Alberto Santos-Zavaleta; Socorro Gama-Castro; Dulce Millán-Zárate; Frederick R. Blattner; Julio Collado-Vides (Nucleic Acids Res., 2000)

On Differential Variability of Expression Ratios: Improving Statistical Inference about Gene Expression Changes from Microarray Data. - Michael A. Newton; C. M. Kendziorski; C. S. Richmond; Frederick R. Blattner; Kam-Wah Tsui (J. Comput. Biol., 2001)

Interpreting microarray expression data using text annotating the genes. - Michael Molla; Peter Andreae; Jeremy D. Glasner; Frederick R. Blattner; Jude W. Shavlik (Inf. Sci., 2002)

Predicting bacterial transcription units using sequence and expression data. - Joseph Bockhorst; Yu Qiu; Jeremy D. Glasner; Mingzhu Liu; Frederick R. Blattner; Mark Craven (ISMB (Supplement of Bioinformatics), 2003)

ASAP, a systematic annotation package for community analysis of genomes. - Jeremy D. Glasner; Paul Liss; Guy Plunkett III; Aaron E. Darling; Tejasvini Prasad; Michael Rusch; Alexis Byrnes; Michael K. Gilson; Bryan S. Biehl; Frederick R. Blattner; Nicole T. Perna (Nucleic Acids Res., 2003)

GRIL: genome rearrangement and inversion locator. - Aaron E. Darling; Bob Mau; Frederick R. Blattner; Nicole T. Perna (Bioinform., 2004)

Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria. - Jeremy D. Glasner; Guy Plunkett III; Bradley D. Anderson; David J. Baumler; Bryan S. Biehl; Valerie Burland; Eric L. Cabot; Aaron E. Darling; Bob Mau; Eric C. Neeno-Eckwall; David Pot; Yu Qiu; et al. (Nucleic Acids Res., 2008)