A Multi-agent System Simulating Human Splice Site Recognition. - Laurence Vignal; Frédérique Lisacek; Joël Quinqueton; Yves D'Aubenton-Carafa; Claude Thermes (Comput. Chem., 1999)

Algorithms on Strings, Trees and Sequences: Dan Gusfield. - Frédérique Lisacek (Comput. Chem., 2000)

Probabilistic alignment of motifs with sequences. - Pedro Gonnet; Frédérique Lisacek (Bioinform., 2002)

Consistency checks for characterizing protein forms. - Christine Chichester; Frédéric Nikitin; Jean-Christophe Ravarini; Frédérique Lisacek (Comput. Biol. Chem., 2003)

Investigating protein domain combinations in complete proteomes. - Frédéric Nikitin; Frédérique Lisacek (Comput. Biol. Chem., 2003)

Using Argumentation to Retrieve Articles with Similar Citations from MEDLINE. - Imad Tbahriti; Christine Chichester; Frédérique Lisacek; Patrick Ruch (NLPBA/BioNLP, 2004)

Extracting Key Sentences with Latent Argumentative Structuring. - Patrick Ruch; Robert H. Baud; Christine Chichester; Antoine Geissbühler; Frédérique Lisacek; Johan Marty; Dietrich Rebholz-Schuhmann; Imad Tbahriti; Anne-Lise Veuthey (MIE, 2005)

Using argumentation to retrieve articles with similar citations: An inquiry into improving related articles search in the MEDLINE digital library. - Imad Tbahriti; Christine Chichester; Frédérique Lisacek; Patrick Ruch (Int. J. Medical Informatics, 2006)

Extracting Sequential Nuggets of Knowledge. - Christine Froidevaux; Frédérique Lisacek; Bastien Rance (DEXA, 2007)

swissPIT: a novel approach for pipelined analysis of mass spectrometry data. - Andreas Quandt; Patricia Hernandez; Alexandre Masselot; Céline Hernandez; Sergio Maffioletti; Cesare Pautasso; Ron D. Appel; Frédérique Lisacek (Bioinform., 2008)

UniCarb-DB: a database resource for glycomic discovery. - Catherine A. Hayes; Niclas G. Karlsson; Weston B. Struwe; Frédérique Lisacek; Pauline M. Rudd; Nicolle H. Packer; Matthew P. Campbell (Bioinform., 2011)

pROC: an open-source package for R and S+ to analyze and compare ROC curves. - Xavier Robin; Natacha Turck; Alexandre Hainard; Natalia Tiberti; Frédérique Lisacek; Jean-Charles Sanchez; Markus Müller 006 (BMC Bioinform., 2011)

eBiomics - A Website Promoting Good Practices and Specific Methods for using Bioinformatics Resources. - Frédérique Lisacek; Patrick Koks; Pascale Berthault; Grégoire Rossier; Guy Bottu; Jacques van Helden; Jean Sylvestre; Jean-Pierre Kraehenbuhl; Jack A. M. Leunissen (BIOINFORMATICS, 2012)

ConoDictor: a tool for prediction of conopeptide superfamilies. - Dominique Koua; Age Brauer; Silja Laht; Lauris Kaplinski; Philippe Favreau; Maido Remm; Frédérique Lisacek; Reto Stöcklin (Nucleic Acids Res., 2012)

GlycoDigest: a tool for the targeted use of exoglycosidase digestions in glycan structure determination. - Lou Götz; Jodie L. Abrahams; Julien Mariethoz; Pauline M. Rudd; Niclas G. Karlsson; Nicolle H. Packer; Matthew P. Campbell; Frédérique Lisacek (Bioinform., 2014)

Toolboxes for a standardised and systematic study of glycans. - Matthew P. Campbell; René Ranzinger; Thomas Lütteke; Julien Mariethoz; Catherine A. Hayes; Jingyu Zhang; Yukie Akune; Kiyoko F. Aoki-Kinoshita; David Damerell; Giorgio Carta; William S. York; Stuart M. Haslam; et al. (BMC Bioinform., 2014)

Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information. - Marco Masseroli; Barend Mons; Erik Bongcam-Rudloff; Stefano Ceri; Alexander E. Kel; François Rechenmann; Frédérique Lisacek; Paolo Romano 001 (BMC Bioinform., 2014)

NETTAB 2012 on "Integrated Bio-Search". - Paolo Romano 001; Frédérique Lisacek; Marco Masseroli (BMC Bioinform., 2014)

UniCarbKB: building a knowledge platform for glycoproteomics. - Matthew P. Campbell; Robyn Peterson; Julien Mariethoz; Elisabeth Gasteiger; Yukie Akune; Kiyoko F. Aoki-Kinoshita; Frédérique Lisacek; Nicolle H. Packer (Nucleic Acids Res., 2014)

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. - Heinz Stockinger; Adrian M. Altenhoff; Konstantin Arnold; Amos Bairoch; Frederic B. Bastian; Sven Bergmann; Lydie Bougueleret; Philipp Bucher; Mauro Delorenzi; Lydie Lane; Philippe Le Mercier; Frédérique Lisacek; et al. (Nucleic Acids Res., 2014)

Glycan Pattern Search. - Davide Alocci; Julien Mariethoz; Frédérique Lisacek (SWAT4LS, 2015)

SugarBindDB, a resource of glycan-mediated host-pathogen interactions. - Julien Mariethoz; Khaled Khatib; Davide Alocci; Matthew P. Campbell; Niclas G. Karlsson; Nicolle H. Packer; Elaine H. Mullen; Frédérique Lisacek (Nucleic Acids Res., 2016)

rBAN: retro-biosynthetic analysis of nonribosomal peptides. - Emma Ricart; Valérie Leclère; Areski Flissi; Markus Müller 006; Maude Pupin; Frédérique Lisacek (J. Cheminformatics, 2019)

UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands. - François Bonnardel; Julien Mariethoz; Sebastian Salentin; Xavier Robin; Michael Schroeder 001; Serge Pérez; Frédérique Lisacek; Anne Imberty (Nucleic Acids Res., 2019)

Proteome Informatics. - Frédérique Lisacek (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

Norine: update of the nonribosomal peptide resource. - Areski Flissi; Emma Ricart; Clémentine Campart; Mickael Chevalier; Yoann Dufresne; Juraj Michalik; Philippe Jacques; Christophe Flahaut; Frédérique Lisacek; Valérie Leclère; Maude Pupin (Nucleic Acids Res., 2020)

LectomeXplore, an update of UniLectin for the discovery of carbohydrate-binding proteins based on a new lectin classification. - François Bonnardel; Julien Mariethoz; Serge Pérez; Anne Imberty; Frédérique Lisacek (Nucleic Acids Res., 2021)

Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users. - Severine Duvaud; Chiara Gabella; Frédérique Lisacek; Heinz Stockinger; Vassilios Ioannidis; Christine Durinx (Nucleic Acids Res., 2021)

Glycan Semantic Model Applications in Substructure Search. - Vincenzo Daponte; Catherine A. Hayes; Julien Mariethoz; Frédérique Lisacek (SWAT4HCLS, 2022)

This is GlycoQL. - Catherine A. Hayes; Vincenzo Daponte; Julien Mariethoz; Frédérique Lisacek (Bioinform., 2022)

Linking glycan and protein data. - Catherine A. Hayes; Vincenzo Daponte; Frédérique Lisacek (SWAT4HCLS, 2023)

Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy. - Karina Martinez; Jon Agirre; Yukie Akune; Kiyoko F. Aoki-Kinoshita; Cecilia N. Arighi; Kristian B. Axelsen; Evan Bolton; Emily Bordeleau; Nathan J. Edwards; Elisa Fadda; Ten Feizi; Catherine A. Hayes; et al. (Database J. Biol. Databases Curation, 2024)