Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting. - Jim Samuelsson; Daniel Dalevi; Fredrik Levander; Thorsteinn S. Rögnvaldsson (Bioinform., 2004)

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary. - Gerhard Mayer; Luisa Montecchi-Palazzi; David Ovelleiro; Andrew R. Jones; Pierre-Alain Binz; Eric W. Deutsch; Matthew Chambers; Marius Kallhardt; Fredrik Levander; James Shofstahl; Sandra E. Orchard; Juan Antonio Vizcaíno; et al. (Database J. Biol. Databases Curation, 2013)

DIANA - algorithmic improvements for analysis of data-independent acquisition MS data. - Johan Teleman; Hannes L. Röst; George Rosenberger; Uwe Schmitt; Lars Malmström; Johan Malmström; Fredrik Levander (Bioinform., 2015)

OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons. - Jakob Willforss; Valentina Siino; Fredrik Levander (BMC Bioinform., 2021)