Genome comparison without alignment using shortest unique substrings. - Bernhard Haubold; Nora Pierstorff; Friedrich Möller; Thomas Wiehe (BMC Bioinform., 2005)

ClustDB: A High-Performance Tool for Large Scale Sequence Matching. - Jürgen Kleffe; Friedrich Möller; Burghardt Wittig (DEXA Workshops, 2006)

Simultaneous identification of long similar substrings in large sets of sequences. - Jürgen Kleffe; Friedrich Möller; Burghardt Wittig (BMC Bioinform., 2007)

Self-Alignments to Detect Mutually Exclusive Exon Usage. - Martin Stephan; Friedrich Möller; Thomas Wiehe; Jürgen Kleffe (Silico Biol., 2007)