MASon: Million Alignments in Seconds - A Platform Independent Pairwise Sequence Alignment Library for next Generation Sequencing Data. - Philipp Rescheneder; Arndt von Haeseler; Fritz J. Sedlazeck (BIOINFORMATICS, 2012)

NextGenMap: fast and accurate read mapping in highly polymorphic genomes. - Fritz J. Sedlazeck; Philipp Rescheneder; Arndt von Haeseler (Bioinform., 2013)

GenomeScope: fast reference-free genome profiling from short reads. - Gregory W. Vurture; Fritz J. Sedlazeck; Maria Nattestad; Charles J. Underwood; Han Fang; James Gurtowski; Michael C. Schatz (Bioinform., 2017)

DangerTrack: A scoring system to detect difficult-to-assess regions. - Igor Dolgalev; Fritz J. Sedlazeck; Ben Busby (F1000Research, 2017)

VariantSurvival: a tool to identify genotype-treatment response. - Thomas Krannich; Marina Herrera Sarrias; Hiba Ben Aribi; Moustafa Shokrof; Alfredo Iacoangeli; Ammar Al-Chalabi; Fritz J. Sedlazeck; Ben Busby; Ahmad Al Khleifat (Frontiers Bioinform., 2023)

SVhound: detection of regions that harbor yet undetected structural variation. - Luis F. Paulin; Muthuswamy Raveendran; R. Alan Harris; Jeffrey Rogers; Arndt von Haeseler; Fritz J. Sedlazeck (BMC Bioinform., 2023)