BOMP: a program to predict integral ?barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. - Frode S. Berven; Kristian Flikka; Harald B. Jensen; Ingvar Eidhammer (Nucleic Acids Res., 2004)

compomics-utilities: an open-source Java library for computational proteomics. - Harald Barsnes; Marc Vaudel; Niklaas Colaert; Kenny Helsens; Albert Sickmann; Frode S. Berven; Lennart Martens (BMC Bioinform., 2011)