Molecular Energetics of Doxorubicin Pumping by Human P-Glycoprotein. - Lijie Wang; Lin Zhang; Fufeng Liu; Yan Sun (J. Chem. Inf. Model., 2019)

PromoterDiff: De Novo Design Approach for Escherichia coli Promoters Based on a Diffusion Model. - Yunkun Cheng; Xiankun Zhang; Fufeng Liu; Danyang Zhao; Xin Luo (CSCWD, 2024)

IPAD-DB: a manually curated database for experimentally verified inhibitors of proteins associated with Alzheimer's disease. - Chong Peng 002; Xiaofeng Liu; Xiangbo Meng; Congge Chen; Xinming Wu; Lin Bai; Fuping Lu; Fufeng Liu (Database J. Biol. Databases Curation, 2024)

LICEDB: light industrial core enzyme database for industrial applications and AI enzyme design. - Lei Gong; Fufeng Liu; Chuanxi Zhang; Yongfan Ming; Yulan Mou; Zhaoting Yuan; Haiming Jiang; Bei Gao; Fuping Lu; Lujia Zhang (Database J. Biol. Databases Curation, 2025)

MTPSol: Multimodal Twin Protein Solubility Prediction Architecture Based on Pretrained Models. - Yuan Gao; Hongkui Wang; Landong Zhang; Fufeng Liu; Jiahai Zhou; Yang Gu (J. Chem. Inf. Model., 2025)