Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing. - Cristian Coarfa; Fuli Yu; Christopher A. Miller 003; Zuozhou Chen; R. Alan Harris; Aleksandar Milosavljevic (BMC Bioinform., 2010)

Enabling Atlas2 personal genome analysis on the cloud. - Uday S. Evani; Danny Challis; Jin Yu 003; Andrew R. Jackson; Sameer Paithankar; Matthew N. Bainbridge; Cristian Coarfa; Aleksandar Milosavljevic; Fuli Yu (GENSiPS, 2011)

A novel approach for alignments output storage problem facing clinical scenarios. - Yiqi Lu; Yanghua Xiao; Yaoliang Chen; Danfeng Xu; Fuli Yu (GENSiPS, 2011)

An integrative variant analysis suite for whole exome next-generation sequencing data. - Danny Challis; Jin Yu 003; Uday S. Evani; Andrew R. Jackson; Sameer Paithankar; Cristian Coarfa; Aleksandar Milosavljevic; Richard A. Gibbs; Fuli Yu (BMC Bioinform., 2012)

Cloud processing of 1000 genomes sequencing data using Amazon Web Service. - Zhuoyi Huang; Jin Yu 003; Fuli Yu (GlobalSIP, 2013)

Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline. - Jeffrey G. Reid; Andrew Carroll; Narayanan Veeraraghavan; Mahmoud Dahdouli; Andreas Sundquist; Adam C. English; Matthew N. Bainbridge; Simon White; William J. Salerno; Christian Buhay; Fuli Yu; Donna M. Muzny; et al. (BMC Bioinform., 2014)

A hybrid computational strategy to address WGS variant analysis in >5000 samples. - Zhuoyi Huang; Navin Rustagi; Narayanan Veeraraghavan; Andrew Carroll; Richard A. Gibbs; Eric Boerwinkle; Manjunath Gorentla Venkata; Fuli Yu (BMC Bioinform., 2016)

Spark在人类基因领域的应用 (Application of Spark in Human Genome). - Dongliang Ding; Dongyue Wu; Fuli Yu (计算机科学, 2016)

MSD-Net: Multi-Scale Discriminative Network for COVID-19 Lung Infection Segmentation on CT. - Bingbing Zheng; Yaoqi Liu; Yu Zhu 005; Fuli Yu; Tianjiao Jiang; Dawei Yang; Tao Xu (IEEE Access, 2020)

A multi-class COVID-19 segmentation network with pyramid attention and edge loss in CT images. - Fuli Yu; Yu Zhu 005; Xiangxiang Qin; Ying Xin; Dawei Yang; Tao Xu (IET Image Process., 2021)

TD-Net: Trans-Deformer network for automatic pancreas segmentation. - Shunbo Dai; Yu Zhu 005; Xiaoben Jiang; Fuli Yu; Jiajun Lin; Dawei Yang (Neurocomputing, 2023)