Picking alignments from (steiner) trees. - Lior Pachter; Fumei Lam (RECOMB, 2002)

Picking Alignments from (Steiner) Trees. - Fumei Lam; Marina Alexandersson; Lior Pachter (J. Comput. Biol., 2003)

Forcing numbers of stop signs. - Fumei Lam; Lior Pachter (Theor. Comput. Sci., 2003)

Efficiently Finding the Most Parsimonious Phylogenetic Tree Via Linear Programming. - Srinath Sridhar 001; Fumei Lam; Guy E. Blelloch; R. Ravi 001; Russell Schwartz (ISBRA, 2007)

Direct maximum parsimony phylogeny reconstruction from genotype data. - Srinath Sridhar 001; Fumei Lam; Guy E. Blelloch; R. Ravi 001; Russell Schwartz (BMC Bioinform., 2007)

Traveling salesman path problems. - Fumei Lam; Alantha Newman (Math. Program., 2008)

Mixed Integer Linear Programming for Maximum-Parsimony Phylogeny Inference. - Srinath Sridhar 001; Fumei Lam; Guy E. Blelloch; R. Ravi 001; Russell Schwartz (IEEE ACM Trans. Comput. Biol. Bioinform., 2008)

Generalizing the Four Gamete Condition and Splits Equivalence Theorem: Perfect Phylogeny on Three State Characters. - Fumei Lam; Dan Gusfield; Srinath Sridhar 001 (WABI, 2009)

Combinatorial Algorithms for Protein Folding in Lattice Models: A Survey of Mathematical Results. - Sorin Istrail; Fumei Lam (Commun. Inf. Syst., 2009)

The Imperfect Ancestral Recombination Graph Reconstruction Problem: Upper Bounds for Recombination and Homoplasy. - Fumei Lam; Ryan Tarpine; Sorin Istrail (J. Comput. Biol., 2010)

Conservative Extensions of Linkage Disequilibrium Measures from Pairwise to Multi-loci and Algorithms for Optimal Tagging SNP Selection. - Ryan Tarpine; Fumei Lam; Sorin Istrail (RECOMB, 2011)

On the Genealogy of Asexual Diploids. - Fumei Lam; Charles H. Langley; Yun S. Song (J. Comput. Biol., 2011)

Generalizing the Splits Equivalence Theorem and Four Gamete Condition: Perfect Phylogeny on Three-State Characters. - Fumei Lam; Dan Gusfield; Srinath Sridhar 001 (SIAM J. Discret. Math., 2011)

Constructing perfect phylogenies and proper triangulations for three-state characters. - Rob Gysel; Fumei Lam; Dan Gusfield (Algorithms Mol. Biol., 2012)