Towards an Ontology of Schizophrenia. - Fumiaki Toyoshima (ICBO/BioCreative, 2016)

Causation and the River Flow Model of Diseases. - Fumiaki Toyoshima; Riichiro Mizoguchi; Mitsuru Ikeda (ICBO, 2017)

YAMATO: Yet Another More Advanced Top-Level Ontology with Analysis of Five Examples of Change. - Riichiro Mizoguchi; Fumiaki Toyoshima (JOWO, 2017)

A Formal Representation of Affordances as Reciprocal Dispositions. - Fumiaki Toyoshima; Adrien Barton (TriCoLore (C3GI/ISD/SCORE), 2018)

First Steps Towards an Ontology of Belief. - Adrien Barton; William Duncan; Fumiaki Toyoshima; Jean-François Ethier (JOWO, 2018)

Modeling Affordances with Dispositions. - Fumiaki Toyoshima (JOWO, 2018)

Three Facets of Roles in Foundational Ontologies. - Fumiaki Toyoshima (JOWO, 2018)

Representing Causation: A Dispositional Perspective. - Fumiaki Toyoshima (ICBO, 2019)

Roles and Their Siblings in Basic Formal Ontology. - Fumiaki Toyoshima (ICBO, 2019)

Towards an Ontology-Driven Machine Learning Approach to the Diagnosis Classification Problem in Autism Spectrum Disorder. - Fumiaki Toyoshima (ICBO, 2019)

How Do Processes Work? - Fumiaki Toyoshima (JOWO, 2019)

Linking Temporal Parts in Processual Biological Ontology. - Fumiaki Toyoshima (JOWO, 2019)

Formalizing a General Disease Module. - Fumiaki Toyoshima (JOWO, 2019)

Representing Value: Function, Capability and Role. - Fumiaki Toyoshima (JOWO, 2019)

A Foundational View on Roles in Conceptual Modeling. - Fumiaki Toyoshima (JOWO, 2019)

Ontology of Time for the Digital Humanities: A Foundational View. - Fumiaki Toyoshima (JOWO, 2019)

Contexts: A Grounding Perspective. - Fumiaki Toyoshima (JOWO, 2019)

Linking Image Schemas with Affordances: An Ontological Approach. - Fumiaki Toyoshima; Adrien Barton (JOWO, 2019)

Causation: A functional perspective. - Fumiaki Toyoshima; Riichiro Mizoguchi; Mitsuru Ikeda (Appl. Ontology, 2019)

The Mereological Structure of Informational Entities. - Adrien Barton; Fumiaki Toyoshima; Laure Vieu; Paul Fabry; Jean-François Ethier (FOIS, 2020)

Foundations for Ontology of Persistence: Beyond Talk of Temporal Parts. - Fumiaki Toyoshima (FOIS, 2020)

Foundations for an Ontology of Belief, Desire and Intention. - Fumiaki Toyoshima; Adrien Barton; Olivier Grenier (FOIS, 2020)

Clinical Documents and Their Parts. - Adrien Barton; Fumiaki Toyoshima; Jean-François Ethier (ICBO/ODLS, 2020)

Approaching Roles with Affordances. - Adrien Barton; Fumiaki Toyoshima; Jean-François Ethier (JOWO, 2020)

Functional Parthood: A Dispositional Perspective. - Fumiaki Toyoshima; Adrien Barton; Jean-François Ethier (JOWO, 2020)

Natural necessity: An introductory guide for ontologists. - Fumiaki Toyoshima (Appl. Ontology, 2020)

Towards a Unified Dispositional Framework for Realizable Entities. - Fumiaki Toyoshima; Adrien Barton; Ludger Jansen; Jean-François Ethier (FOIS, 2021)

Representing Gender in Ontologies: A Dispositional Perspective. - Fumiaki Toyoshima; Adrien Barton; Paul Fabry; Jean-François Ethier (ICBO, 2021)

How an Aggregate View of Social Roles Meets Dispositions. - Fumiaki Toyoshima; Adrien Barton; Ludger Jansen; Jean-François Éthier (JOWO, 2021)

Semantics Matters: A New Light on Ontological Commitments of Logics. - Fumiaki Toyoshima; Satoru Niki (JOWO, 2021)

Roles and their three facets: A foundational perspective. - Fumiaki Toyoshima (Appl. Ontology, 2021)

An Ontological Approach to Developing a Unified and Interdisciplinary Framework for Aging. - Fumiaki Toyoshima; Adrien Barton; Jean-François Ethier (ICBO, 2022)

Investigating Functions in BFO From the Viewpoint of Extrinsic Dispositions (short paper). - Fumiaki Toyoshima; Adrien Barton; Jean-François Ethier (JOWO, 2022)

Affordances and their ontological core. - Fumiaki Toyoshima; Adrien Barton; Jean-François Ethier (Appl. Ontology, 2022)

Foundations for a Realist Ontology of Mental Representation. - Fumiaki Toyoshima; Adrien Barton (JOWO, 2023)

Two Approaches to the Identity of Processes in BFO. - Fumiaki Toyoshima; Adrien Barton (JOWO, 2023)

To Be More Concrete About Abstracta and Concreta. - Fumiaki Toyoshima; Satoru Niki (FOIS, 2024)

What is food? An investigation into food realizables. - Adrien Barton; Fumiaki Toyoshima; Damion M. Dooley (JOWO, 2024)

Artifactual functions: A dual, realizable-based view. - Fumiaki Toyoshima; Adrien Barton; Kathrin Koslicki (JOWO, 2024)

The interconnection between artifacts and realizable entities. - Fumiaki Toyoshima; Adrien Barton; Kathrin Koslicki; Olivier Massin (JOWO, 2024)