LogGPS: a parallel computational model for synchronization analysis. - Fumihiko Ino; Noriyuki Fujimoto; Kenichi Hagihara (PPoPP, 2001)

A high-performance computing service over the Internet for nonrigid image registration. - Fumihiko Ino; Kanrou Ooyama; Yasuhiro Kawasaki; Akira Takeuchi; Yasuharu Mizutani; Jun Masumoto; Yoshinobu Sato; Nobuhiko Sugano; Takashi Nishii; Hidenobu Miki; Hideki Yoshikawa; Kazuo Yonenobu; et al. (CARS, 2003)

An Emulation System for Predicting Master/Slave Program Performance. - Yasuharu Mizutani; Fumihiko Ino; Kenichi Hagihara (Euro-Par, 2003)

A High Performance Computing System for Medical Imaging in the Remote Operating Room. - Yasuhiro Kawasaki; Fumihiko Ino; Yasuharu Mizutani; Noriyuki Fujimoto; Toshihiko Sasama; Yoshinobu Sato; Shinichi Tamura; Kenichi Hagihara (HiPC, 2003)

A Divided-Screenwise Hierarchical Compositing for Sort-Last Parallel Volume Rendering. - Fumihiko Ino; Tomomitsu Sasaki; Akira Takeuchi; Kenichi Hagihara (IPDPS, 2003)

Design and Implementation of Parallel Nonrigid Image Registration Using Off-the-Shelf Supercomputers. - Fumihiko Ino; Kanrou Ooyama; Akira Takeuchi; Kenichi Hagihara (MICCAI (1), 2003)

An Improvement on Binary-Swap Compositing for Sort-Last Parallel Rendering. - Akira Takeuchi; Fumihiko Ino; Kenichi Hagihara (SAC, 2003)

Debugging Tool for Localizing Faulty Processes in Message Passing Programs - Masao Okita; Fumihiko Ino; Kenichi Hagihara (CoRR, 2003)

An improved binary-swap compositing for sort-last parallel rendering on distributed memory multiprocessors. - Akira Takeuchi; Fumihiko Ino; Kenichi Hagihara (Parallel Comput., 2003)

A Performance Analysis Tool for Performance Debugging of Message Passing Parallel Programs. - Fumihiko Ino; Kenichi Hagihara (ICPP Workshops, 2004)

Parallel Volume Rendering with Early Ray Termination for Visualizing Large-Scale Datasets. - Manabu Matsui; Fumihiko Ino; Kenichi Hagihara (ISPA, 2004)

Real-Time Estimation of Hip Range of Motion for Total Hip Replacement Surgery. - Yasuhiro Kawasaki; Fumihiko Ino; Yoshinobu Sato; Nobuhiko Sugano; Hideki Yoshikawa; Shinichi Tamura; Kenichi Hagihara (MICCAI (2), 2004)

PerWiz: A What-If Prediction Tool for Tuning Message Passing Programs. - Fumihiko Ino; Yuki Kanbe; Masao Okita; Kenichi Hagihara (VECPAR, 2004)

Evaluation of Performance Prediction Method for Master/Slave Parallel Programs. - Yasuharu Mizutani; Fumihiko Ino; Kenichi Hagihara (IEICE Trans. Inf. Syst., 2004)

High-performance computing service over the Internet for intraoperative image processing. - Yasuhiro Kawasaki; Fumihiko Ino; Yasuharu Mizutani; Noriyuki Fujimoto; Toshihiko Sasama; Yoshinobu Sato; Nobuhiko Sugano; Shinichi Tamura; Kenichi Hagihara (IEEE Trans. Inf. Technol. Biomed., 2004)

Performance Study of LU Decomposition on the Programmable GPU. - Fumihiko Ino; Manabu Matsui; Keigo Goda; Kenichi Hagihara (HiPC, 2005)

Performance Study of Nonrigid Registration Algorithm for Investigating Lung Disease on Clusters. - Fumihiko Ino; Yuya Tanaka; Kenichi Hagihara; Hiroko Kitaoka (PDCAT, 2005)

A data distributed parallel algorithm for nonrigid image registration. - Fumihiko Ino; Kanrou Ooyama; Kenichi Hagihara (Parallel Comput., 2005)

Two-stage compression for fast volume rendering of time-varying scalar data. - Daisuke Nagayasu; Fumihiko Ino; Kenichi Hagihara (GRAPHITE, 2006)

A code motion technique for accelerating general-purpose computation on the GPU. - Takatoshi Ikeda; Fumihiko Ino; Kenichi Hagihara (IPDPS, 2006)

Minimizing Data Size for Efficient Data Reuse in Grid-Enabled Medical Applications. - Fumihiko Ino; Katsunori Matsuo; Yasuharu Mizutani; Kenichi Hagihara (ISBMDA, 2006)

A GPGPU Approach for Accelerating 2-D/3-D Rigid Registration of Medical Images. - Fumihiko Ino; Jun Gomita; Yasuhiro Kawasaki; Kenichi Hagihara (ISPA, 2006)

A Resource Selection Method for Cycle Stealing in the GPU Grid. - Yuki Kotani; Fumihiko Ino; Kenichi Hagihara (ISPA Workshops, 2006)

Grid Resource Monitoring and Selection for Rapid Turnaround Applications. - Kensuke Muraki; Yasuhiro Kawasaki; Yasuharu Mizutani; Fumihiko Ino; Kenichi Hagihara (IEICE Trans. Inf. Syst., 2006)

A parallel implementation of 2-D/3-D image registration for computer-assisted surgery. - Fumihiko Ino; Yasuhiro Kawasaki; Takahito Tashiro; Yoshikazu Nakajima; Yoshinobu Sato; Shinichi Tamura; Kenichi Hagihara (Int. J. Bioinform. Res. Appl., 2006)

Trace reduction for performance improvement assessment of message passing parallel programs. - Fumihiko Ino; Yuki Kanbe; Masao Okita; Kenichi Hagihara (Syst. Comput. Jpn., 2006)

Real-time rendering of time-varying volume data using a single cots computer. - Daisuke Nagayasu; Fumihiko Ino; Kenichi Hagihara (GRAPP (GM/R), 2007)

Parallel Adaptive Estimation of Hip Range of Motion for Total Hip Replacement Surgery. - Yasuhiro Kawasaki; Fumihiko Ino; Yoshinobu Sato; Shinichi Tamura; Kenichi Hagihara (IEICE Trans. Inf. Syst., 2007)

Design and implementation of the Smith-Waterman algorithm on the CUDA-compatible GPU. - Yuma Munekawa; Fumihiko Ino; Kenichi Hagihara (BIBE, 2008)

Accelerating Cone Beam Reconstruction Using the CUDA-Enabled GPU. - Yusuke Okitsu; Fumihiko Ino; Kenichi Hagihara (HiPC, 2008)

A Task Parallel Algorithm for Computing the Costs of All-Pairs Shortest Paths on the CUDA-Compatible GPU. - Tomohiro Okuyama; Fumihiko Ino; Kenichi Hagihara (ISPA, 2008)

A decompression pipeline for accelerating out-of-core volume rendering of time-varying data. - Daisuke Nagayasu; Fumihiko Ino; Kenichi Hagihara (Comput. Graph., 2008)

A Resource Selection System for Cycle Stealing in GPU Grids. - Yuki Kotani; Fumihiko Ino; Kenichi Hagihara (J. Grid Comput., 2008)

Harnessing the power of idle GPUs for acceleration of biological sequence alignment. - Fumihiko Ino; Yuki Kotani; Kenichi Hagihara (IPDPS, 2009)

Harnessing the Power of Idle GPUs for Acceleration of Biological Sequence Alignment. - Fumihiko Ino; Yuki Kotani; Yuma Munekawa; Kenichi Hagihara (Parallel Process. Lett., 2009)

Out-of-core cone beam reconstruction using multiple GPUS. - Fumihiko Ino; Yusuke Okitsu; Taketo Kishi; Syuhei Ohnishi; Kenichi Hagihara (ISBI, 2010)

Accelerating Smith-Waterman Algorithm for Biological Database Search on CUDA-Compatible GPUs. - Yuma Munekawa; Fumihiko Ino; Kenichi Hagihara (IEICE Trans. Inf. Syst., 2010)

A middleware for efficient stream processing in CUDA. - Shinta Nakagawa; Fumihiko Ino; Kenichi Hagihara (Comput. Sci. Res. Dev., 2010)

High-performance cone beam reconstruction using CUDA compatible GPUs. - Yusuke Okitsu; Fumihiko Ino; Kenichi Hagihara (Parallel Comput., 2010)

Accelerating Parameter Sweep Applications Using CUDA. - Masaya Motokubota; Fumihiko Ino; Kenichi Hagihara (PDP, 2011)

Improving Cache Locality for Ray Casting with CUDA. - Yuki Sugimoto; Fumihiko Ino; Kenichi Hagihara (ARCS Workshops, 2012)

Acceleration of variance of color differences-based demosaicing using CUDA. - Muhammad Ismail Faruqi; Fumihiko Ino; Kenichi Hagihara (HPCS, 2012)

Cooperative multitasking for GPU-accelerated grid systems. - Fumihiko Ino; Akihiro Ogita; Kentaro Oita; Kenichi Hagihara (Concurr. Comput. Pract. Exp., 2012)

A task parallel algorithm for finding all-pairs shortest paths using the GPU. - Tomohiro Okuyama; Fumihiko Ino; Kenichi Hagihara (Int. J. High Perform. Comput. Netw., 2012)

Sequence Homology Search Using Fine Grained Cycle Sharing of Idle GPUs. - Fumihiko Ino; Yuma Munekawa; Kenichi Hagihara (IEEE Trans. Parallel Distributed Syst., 2012)

The Past, Present, and Future of GPU-Accelerated Grid Computing. - Fumihiko Ino (CANDAR, 2013)

GPU-Chariot: A Programming Framework for Stream Applications Running on Multi-GPU Systems. - Fumihiko Ino; Shinta Nakagawa; Kenichi Hagihara (IEICE Trans. Inf. Syst., 2013)

A Parallel Algorithm for Enumerating Joint Weight of a Binary Linear Code in Network Coding. - Shohei Ando; Fumihiko Ino; Toru Fujiwara; Kenichi Hagihara (CANDAR, 2014)

A parallel scheme for accelerating parameter sweep applications on a GPU. - Fumihiko Ino; Kentaro Shigeoka; Tomohiro Okuyama; Masaya Motokubota; Kenichi Hagihara (Concurr. Comput. Pract. Exp., 2014)

A Fine Grained Cycle Sharing System with Cooperative Multitasking on GPUs. - Fumihiko Ino; Yosuke Oka; Kenichi Hagihara (Int. J. Netw. Comput., 2014)

Improving cache locality for GPU-based volume rendering. - Yuki Sugimoto; Fumihiko Ino; Kenichi Hagihara (Parallel Comput., 2014)

Efficient Acceleration of Mutual Information Computation for Nonrigid Registration Using CUDA. - Kei Ikeda; Fumihiko Ino; Kenichi Hagihara (IEEE J. Biomed. Health Informatics, 2014)

Accelerating the Smith-Waterman algorithm with interpair pruning and band optimization for the all-pairs comparison of base sequences. - Daiki Okada; Fumihiko Ino; Kenichi Hagihara (BMC Bioinform., 2015)

Enumerating Joint Weight of a Binary Linear Code Using Parallel Architectures: multi-core CPUs and GPUs. - Shohei Ando; Fumihiko Ino; Toru Fujiwara; Kenichi Hagihara (Int. J. Netw. Comput., 2015)

A bit-parallel algorithm for searching multiple patterns with various lengths. - Ko Kusudo; Fumihiko Ino; Kenichi Hagihara (J. Parallel Distributed Comput., 2015)

Towards Automating Multi-dimensional Data Decomposition for Executing a Single-GPU Code on a Multi-GPU System. - Ryotaro Sakai; Fumihiko Ino; Kenichi Hagihara (CANDAR, 2016)

An OpenACC Optimizer for Accelerating Histogram Computation on a GPU. - Kei Ikeda; Fumihiko Ino; Kenichi Hagihara (PDP, 2016)

An Extension of OpenACC Directives for Out-of-Core Stencil Computation with Temporal Blocking. - Nobuhiro Miki; Fumihiko Ino; Kenichi Hagihara (WACCPD@SC, 2016)

Cache-Aware GPU Optimization for Out-of-Core Cone Beam CT Reconstruction of High-Resolution Volumes. - Yuechao Lu; Fumihiko Ino; Kenichi Hagihara (IEICE Trans. Inf. Syst., 2016)

Reducing memory usage by the lifting-based discrete wavelet transform with a unified buffer on a GPU. - Takuya Ikuzawa; Fumihiko Ino; Kenichi Hagihara (J. Parallel Distributed Comput., 2016)

Accelerating scoring computation of Smith-Waterman algorithm with mixed word length. - Kazuki Yasui; Fumihiko Ino (BIBM, 2017)

An Out-of-Core Branch and Bound Method for Solving the 0-1 Knapsack Problem on a GPU. - Jingcheng Shen; Kentaro Shigeoka; Fumihiko Ino; Kenichi Hagihara (ICA3PP, 2017)

High-Performance Out-of-core Block Randomized Singular Value Decomposition on GPU. - Yuechao Lu; Fumihiko Ino; Yasuyuki Matsushita (CoRR, 2017)

Cache-Aware, In-Place Rotation Method for Texture-Based Volume Rendering. - Yuji Misaki; Fumihiko Ino; Kenichi Hagihara (IEICE Trans. Inf. Syst., 2017)

Parallelizing Exact and Approximate String Matching via Inclusive Scan on a GPU. - Yasuaki Mitani; Fumihiko Ino; Kenichi Hagihara (IEEE Trans. Parallel Distributed Syst., 2017)

An Automated Method for Generating Training Sets for Deep Learning based Image Registration. - Masato Ito; Fumihiko Ino (BIOIMAGING, 2018)

A Method for Estimating Task Granularity for Automating GPU Cycle Sharing. - Keishi Tsukada; Fumihiko Ino (ICNCC, 2018)

Transparent Avoidance of Redundant Data Transfer on GPU-enabled Apache Spark. - Ryo Asai; Masao Okita; Fumihiko Ino; Kenichi Hagihara (GPGPU@PPoPP, 2018)

Transparent In-memory Cache Management in Apache Spark based on Post-Mortem Analysis. - Atsuya Nasu; Kenji Yoneo; Masao Okita; Fumihiko Ino (IEEE BigData, 2019)

GPU-based branch-and-bound method to solve large 0-1 knapsack problems with data-centric strategies. - Jingcheng Shen; Kentaro Shigeoka; Fumihiko Ino; Kenichi Hagihara (Concurr. Comput. Pract. Exp., 2019)

Accelerating the Held-Karp Algorithm for the Symmetric Traveling Salesman Problem. - Kazuro Kimura; Shinya Higa; Masao Okita; Fumihiko Ino (IEICE Trans. Inf. Syst., 2019)

Memory Efficient Load Balancing for Distributed Large-Scale Volume Rendering Using a Two-Layered Group Structure. - Marcus Wallden; Stefano Markidis; Masao Okita; Fumihiko Ino (IEICE Trans. Inf. Syst., 2019)

PACC: a directive-based programming framework for out-of-core stencil computation on accelerators. - Nobuhiro Miki; Fumihiko Ino; Kenichi Hagihara (Int. J. High Perform. Comput. Netw., 2019)

Training Strategies for CNN-based Models to Parse Complex Floor Plans. - Ruiyun Zhu; Jingcheng Shen; Xiangtian Deng; Marcus Wallden; Fumihiko Ino (ICSCA, 2020)

Accelerating Human Genome Phenotypic Analysis with Bitwise Search and Batched Computation. - Yuichiro Miyamoto; Masao Okita; Fumihiko Ino (PDP, 2020)

Reducing the amount of out-of-core data access for GPU-accelerated randomized SVD. - Yuechao Lu; Ichitaro Yamazaki; Fumihiko Ino; Yasuyuki Matsushita; Stanimire Tomov; Jack J. Dongarra (Concurr. Comput. Pract. Exp., 2020)

Block Randomized Singular Value Decomposition on GPUs. - Yuechao Lu; Yasuyuki Matsushita; Fumihiko Ino (IEICE Trans. Inf. Syst., 2020)

A Data-Centric Directive-Based Framework to Accelerate Out-of-Core Stencil Computation on a GPU. - Jingcheng Shen; Fumihiko Ino; Albert Farrés; Mauricio Hanzich (IEICE Trans. Inf. Syst., 2020)

Accelerating a Lossy Compression Method with Fine-Grained Parallelism on a GPU. - Yifan Wu; Jingcheng Shen; Masao Okita; Fumihiko Ino (PAAP, 2021)

Accelerating GPU-Based Out-of-Core Stencil Computation with On-the-Fly Compression. - Jingcheng Shen; Yifan Wu; Masao Okita; Fumihiko Ino (PDCAT, 2021)

Accelerating In-Transit Co-Processing for Scientific Simulations Using Region-Based Data-Driven Analysis. - Marcus Wallden; Masao Okita; Fumihiko Ino; Dimitris Drikakis; Ioannis Kokkinakis (Algorithms, 2021)

Cache-aware volume rendering methods with dynamic data reorganization. - Ruiyun Zhu; Yuji Misaki; Marcus Wallden; Fumihiko Ino (J. Vis., 2021)

A One-Shot Reparameterization Method for Reducing the Loss of Tile Pruning on DNNs. - Yanchen Li; Qingzhong Ai; Fumihiko Ino (IJCNN, 2022)

Accelerating Imbalanced Many-to-Many Communication with Systematic Delay Insertion. - Hirotoshi Yamada; Masao Okita; Fumihiko Ino (PDCAT, 2022)

Compression-Based Optimizations for Out-of-Core GPU Stencil Computation. - Jingcheng Shen; Xin Deng; Yifan Wu; Masao Okita; Fumihiko Ino (CoRR, 2022)

A Reorder Trick for Decision Diagram Based Quantum Circuit Simulation. - Jingcheng Shen; Linbo Long; Masao Okita; Fumihiko Ino (CoRR, 2022)

PRF: A Fast Parallel Relaxed Flooding Algorithm for Voronoi Diagram Generation on GPU. - Jue Wang; Fumihiko Ino; Jing Ke (IPDPS, 2023)

Parallel Heuristic Methods to Accelerate Best Equivocation Code Generation. - Yanchen Li; Ke Zhang; Fumihiko Ino (IEEE Access, 2023)

A Synergy between On- and Off-Chip Data Reuse for GPU-based Out-of-Core Stencil Computation. - Jingcheng Shen; Linbo Long; Jun Zhang; Weiqi Shen; Masao Okita; Fumihiko Ino (CoRR, 2023)

A compression-based memory-efficient optimization for out-of-core GPU stencil computation. - Jingcheng Shen; Linbo Long; Xin Deng; Masao Okita; Fumihiko Ino (J. Supercomput., 2023)

Lazy Qubit Reordering for Accelerating Parallel State-Vector-based Quantum Circuit Simulation. - Yusuke Teranishi; Shoma Hiraoka; Wataru Mizukami; Masao Okita; Fumihiko Ino (CoRR, 2024)

A theoretical and empirical exploration of TileTrans for effective tile pruning. - Yanchen Li; Fumihiko Ino (Knowl. Based Syst., 2024)

Overlapping Aware Data Placement Optimizations for LSM Tree-Based Store on ZNS SSDs. - Jingcheng Shen; Lang Yang; Linbo Long; Zhenhua Tan; Congming Gao; Kan Zhong; Masao Okita; Fumihiko Ino (ACM Trans. Archit. Code Optim., 2025)