Combined prediction of transmembrane topology and signal peptide of β-barrel proteins: Using a hidden Markov model and genetic algorithms. - Lingyun Zou; Zhengzhi Wang; Yongxian Wang; Fuquan Hu (Comput. Biol. Medicine, 2010)

Accurate prediction of bacterial type IV secreted effectors using amino acid composition and PSSM profiles. - Lingyun Zou; Chonghan Nan; Fuquan Hu (Bioinform., 2013)

EBGW_OMP: A sequence-based method for accurate prediction of outer membrane proteins. - Lingyun Zou; Qingshan Ni; Fuquan Hu (CIBCB, 2014)