Presence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a 'weak' context of the start codon. - Igor B. Rogozin; Alexey V. Kochetov; Fyodor A. Kondrashov; Eugene V. Koonin; Luciano Milanesi (Bioinform., 2001)

A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures. - Konstantin Yu Popadin; Leila A. Mamirova; Fyodor A. Kondrashov (BMC Bioinform., 2007)

Epistasis as the primary factor in molecular evolution. - Michael S. Breen; Carsten Kemena; Peter K. Vlasov; Cédric Notredame; Fyodor A. Kondrashov (Nat., 2012)

The ctenophore genome and the evolutionary origins of neural systems Open. - Leonid L. Moroz; Kevin M. Kocot; Mathew R. Citarella; Sohn Dosung; Tigran P. Norekian; Inna S. Povolotskaya; Anastasia P. Grigorenko; Christopher Dailey; Eugene Berezikov; Katherine M. Buckley; Andrey A. Ptitsyn; Denis A. Reshetov; et al. (Nat., 2014)

Local fitness landscape of the green fluorescent protein. - Karen S. Sarkisyan; Dmitry Bolotin; Margarita V. Meer; Dinara R. Usmanova; Alexander S. Mishin; George V. Sharonov; Dmitry N. Ivankov; Nina G. Bozhanova; Mikhail S. Baranov; Onuralp Soylemez; Natalya S. Bogatyreva; Peter K. Vlasov; et al. (Nat., 2016)

Self-consistency test reveals systematic bias in programs for prediction change of stability upon mutation. - Dinara R. Usmanova; Natalya S. Bogatyreva; Joan Ariño Bernad; Aleksandra A. Eremina; Anastasiya A. Gorshkova; German M. Kanevskiy; Lyubov R. Lonishin; Alexander V. Meister; Alisa G. Yakupova; Fyodor A. Kondrashov; Dmitry N. Ivankov (Bioinform., 2018)

HypercubeME: two hundred million combinatorially complete datasets from a single experiment. - Laura A. Esteban; Lyubov R. Lonishin; Daniil M. Bobrovskiy; Gregory Leleytner; Natalya S. Bogatyreva; Fyodor A. Kondrashov; Dmitry N. Ivankov (Bioinform., 2020)