Optimized radiofrequency coils for increased signal-to-noise ratio in magnetic resonance microscopy. - S. E. Hurlston; Gary P. Cofer; G. Allan Johnson (Int. J. Imaging Syst. Technol., 1997)

Automated feedback control of body temperature for small animal studies with MR microscopy. - Hui H. Qiu; Gary P. Cofer; Laurence W. Hedlund; G. Allan Johnson (IEEE Trans. Biomed. Eng., 1997)

Measuring the progression of foreign-body reaction to silicone implants using in vivo MR microscopy. - Hui H. Qiu; Laurence W. Hedlund; Michael R. Neuman; C. R. Edwards; Robert D. Black; Gary P. Cofer; G. Allan Johnson (IEEE Trans. Biomed. Eng., 1998)

Distributed Multiuser Visualization of Time Varying Anatomical Data. - Arthur W. Wetzel; Stuart M. Pomerantz; Démian Nave; Walter Meixner; G. Allan Johnson (AIPR, 2001)

An engineering approach to image-based phenotyping. - G. Allan Johnson; Gary P. Cofer; Sally L. Gewalt; Laurence Hedlund (ISBI, 2002)

Volumetric Micro-CT System for In Vivo Microscopy. - Cristian T. Badea; Laurence Hedlund; Charles Wheeler; Wilfried Mai; G. Allan Johnson (ISBI, 2004)

Optimized Radiographic Spectra for Digital Subtraction Angiography in the Mouse. - Ming De Lin; Cristian T. Badea; G. Allan Johnson (ISBI, 2004)

Effects of Breathing Motion On The Spatial Resolution In Microscopic Imaging Techniques of Rodents. - Wilfried Mai; Cristian T. Badea; Charles Wheeler; Laurence Hedlund; G. Allan Johnson (ISBI, 2004)

Magnetic resonance imaging at microscopic resolution reveals subtle morphological changes in a mouse model of dopaminergic hyperfunction. - Michel Cyr; Marc G. Caron; G. Allan Johnson; Aki Laakso (NeuroImage, 2005)

Automated segmentation of neuroanatomical structures in multispectral MR microscopy of the mouse brain. - Anjum A. Sharief; Anders M. Dale; Alexandra Badea; G. Allan Johnson (NeuroImage, 2005)

Functional imaging in small animals using tomographic digital subtraction angiography. - Cristian T. Badea; Laurence Hedlund; Ming De Lin; Julie F. Boslego; G. Allan Johnson (ISBI, 2006)

Micro radiography imaging of the rodent with phenylephrine induced vascular hypertension. - Ming De Lin; Laurence Hedlund; G. Allan Johnson (ISBI, 2006)

Multimodality imaging of pulmonary function in the rodent. - Nilesh Mistry; Ming De Lin; Laurence Hedlund; G. Allan Johnson (ISBI, 2006)

Morphometric analysis of the C57BL/6J mouse brain. - Alexandra Badea; A. A. Ali-Sharief; G. Allan Johnson (NeuroImage, 2007)

Neuroanatomical phenotypes in the Reeler mouse. - Alexandra Badea; Peter Nicholls; G. Allan Johnson; William C. Wetsel (NeuroImage, 2007)

High-throughput morphologic phenotyping of the mouse brain with magnetic resonance histology. - G. Allan Johnson; Anjum Ali-Sharief; Alexandra Badea; Jeffrey Brandenburg; Gary P. Cofer; Boma Fubara; Sally L. Gewalt; Laurence W. Hedlund; Lucy Upchurch (NeuroImage, 2007)

Left ventricle volume measurements in cardiac micro-CT: The impact of radiation dose and contrast agent. - Cristian T. Badea; Arthur W. Wetzel; Nilesh Mistry; Stuart M. Pomerantz; Démian Nave; G. Allan Johnson (Comput. Medical Imaging Graph., 2008)

Automated segmentation of the actively stained mouse brain using multi-spectral MR microscopy. - Anjum A. Sharief; Alexandra Badea; Anders M. Dale; G. Allan Johnson (NeuroImage, 2008)

A High-Precision Contrast Injector for Small Animal X-Ray Digital Subtraction Angiography. - Ming De Lin; Lutao Ning; Cristian T. Badea; Nilesh Mistry; Yi Qi; G. Allan Johnson (IEEE Trans. Biomed. Eng., 2008)

Genetic dissection of the mouse brain using high-field magnetic resonance microscopy. - Alexandra Badea; G. Allan Johnson; Robert W. Williams (NeuroImage, 2009)

Purkinje cell loss in experimental autoimmune encephalomyelitis. - Allan MacKenzie-Graham; Seema K. Tiwari-Woodruff; Gaurav Sharma; Cynthia Aguilar; Kieumai T. Vo; Lauren V. Strickland; Laurie Morales; Boma Fubara; Melanie Martin; Russell E. Jacobs; G. Allan Johnson; Arthur W. Toga; et al. (NeuroImage, 2009)

Least-Square NUFFT Methods Applied to 2-D and 3-D Radially Encoded MR Image Reconstruction. - Jiayu Song; Yanhui Liu; Sally L. Gewalt; Gary P. Cofer; G. Allan Johnson; Qing Huo Liu (IEEE Trans. Biomed. Eng., 2009)

Static and dynamic cardiac modelling: initial strides and results towards a quantitatively accurate mechanical heart model. - Christakis Constantinides; Nicolas Aristokleous; G. Allan Johnson; Dimitris Perperides (ISBI, 2010)

Remote sites of structural atrophy predict later amyloid formation in a mouse model of Alzheimer's disease. - Alexandra Badea; G. Allan Johnson; Joanna L. Jankowsky (NeuroImage, 2010)

Ultrasonic disruption of the blood-brain barrier enables in vivo functional mapping of the mouse barrel field cortex with manganese-enhanced MRI. - Gabriel P. Howles; Yi Qi; G. Allan Johnson (NeuroImage, 2010)

Microscopic diffusion tensor imaging of the mouse brain. - Yi Jiang; G. Allan Johnson (NeuroImage, 2010)

Waxholm Space: An image-based reference for coordinating mouse brain research. - G. Allan Johnson; Alexandra Badea; Jeffrey Brandenburg; Gary P. Cofer; Boma Fubara; Song Liu; Jonathan Nissanov (NeuroImage, 2010)

Microscopic diffusion tensor atlas of the mouse brain. - Yi Jiang; G. Allan Johnson (NeuroImage, 2011)

High-field (9.4 T) MRI of brain dysmyelination by quantitative mapping of magnetic susceptibility. - Chunlei Liu 004; Wei Li 041; G. Allan Johnson; Bing Wu (NeuroImage, 2011)

Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain. - Jelle Veraart; Trygve B. Leergaard; Bjørnar T. Antonsen; Wim Van Hecke; Ines Blockx; Ben Jeurissen; Yi Jiang; Annemie van der Linden; G. Allan Johnson; Marleen Verhoye; Jan Sijbers (NeuroImage, 2011)

Digital Atlasing and Standardization in the Mouse Brain. - Michael Hawrylycz; Richard A. Baldock; Albert Burger; Tsutomu Hashikawa; G. Allan Johnson; Maryann E. Martone; Lydia Ng; Christopher Lau; Stephen D. Larson; Jonathan Nissanov; Luis Puelles; Seth Ruffins; et al. (PLoS Comput. Biol., 2011)

Denoising of 4D cardiac micro-CT data using median-centric bilateral filtration. - Darin P. Clark; G. Allan Johnson; Cristian T. Badea (Image Processing, 2012)

Morphological studies of the murine heart based on probabilistic and statistical atlases. - Dimitrios Perperidis; Elizabeth Bucholz; G. Allan Johnson; Christakis Constantinides (Comput. Medical Imaging Graph., 2012)

Quantitative mouse brain phenotyping based on single and multispectral MR protocols. - Alexandra Badea; Sally L. Gewalt; Brian B. Avants; James J. Cook; G. Allan Johnson (NeuroImage, 2012)

A multidimensional magnetic resonance histology atlas of the Wistar rat brain. - G. Allan Johnson; Evan Calabrese; Alexandra Badea; George Paxinos; Charles Watson (NeuroImage, 2012)

3D fiber tractography with susceptibility tensor imaging. - Chunlei Liu 004; Wei Li 041; Bing Wu; Yi Jiang; G. Allan Johnson (NeuroImage, 2012)

Constructing a 4D murine cardiac micro-CT atlas for automated segmentation and phenotyping applications. - Darin P. Clark; Alexandra Badea; G. Allan Johnson; Cristian T. Badea (Image Processing, 2013)

A quantitative magnetic resonance histology atlas of postnatal rat brain development with regional estimates of growth and variability. - Evan Calabrese; Alexandra Badea; Charles Watson; G. Allan Johnson (NeuroImage, 2013)

Diffusion tensor magnetic resonance histology reveals microstructural changes in the developing rat brain. - Evan Calabrese; G. Allan Johnson (NeuroImage, 2013)

An ontology-based segmentation scheme for tracking postnatal changes in the developing rodent brain with MRI. - Evan Calabrese; G. Allan Johnson; Charles Watson (NeuroImage, 2013)

Helical dual source cone-beam micro-CT. - Samuel M. Johnston; G. Allan Johnson; Cristian T. Badea (ISBI, 2014)

Quantitative magnetic susceptibility of the developing mouse brain reveals microstructural changes in the white matter. - Ioannis Argyridis; Wei Li 041; G. Allan Johnson; Chunlei Liu 004 (NeuroImage, 2014)

Prenatal alcohol exposure reduces magnetic susceptibility contrast and anisotropy in the white matter of mouse brains. - Wei Cao; Wei Li 041; Hui Han; Shonagh K. O'Leary-Moore; Kathleen K. Sulik; G. Allan Johnson; Chunlei Liu 004 (NeuroImage, 2014)

Waxholm Space atlas of the Sprague Dawley rat brain. - Eszter A. Papp; Trygve B. Leergaard; Evan Calabrese; G. Allan Johnson; Jan G. Bjaalie (NeuroImage, 2014)

A diffusion tensor MRI atlas of the postmortem rhesus macaque brain. - Evan Calabrese; Alexandra Badea; Christopher L. Coe; Gabriele R. Lubach; Yundi Shi; Martin Andreas Styner; G. Allan Johnson (NeuroImage, 2015)

Addendum to "Waxholm Space atlas of the Sprague Dawley rat brain" [NeuroImage 97 (2014) 374-386]. - Eszter A. Papp; Trygve B. Leergaard; Evan Calabrese; G. Allan Johnson; Jan G. Bjaalie (NeuroImage, 2015)

Image-processing pipelines: applications in magnetic resonance histology. - G. Allan Johnson; Robert J. Anderson; James J. Cook; Christopher Long; Alexandra Badea (Image Processing, 2016)

Imaging whole-brain cytoarchitecture of mouse with MRI-based quantitative susceptibility mapping. - Hongjiang Wei; Luke Xie; Russell Dibb; Wei Li 041; Kyle Decker; Yuyao Zhang; G. Allan Johnson; Chunlei Liu 004 (NeuroImage, 2016)

An HPC Pipeline with Validation Framework for Small Animal Multivariate Brain Analysis (SAMBA). - Robert J. Anderson; James J. Cook; Natalie A. Delpratt; John C. Nouls; Bin Gu; James O. McNamara; Brian B. Avants; G. Allan Johnson; Alexandra Badea (CoRR, 2017)

Identifying Vulnerable Brain Networks in Mouse Models of Genetic Risk Factors for Late Onset Alzheimer's Disease. - Alexandra Badea; Wenlin Wu; Jordan Shuff; Michele Wang; Robert J. Anderson; Yi Qi; G. Allan Johnson; Joan G. Wilson; Serge Koudoro; Eleftherios Garyfallidis; Carol A. Colton; David B. Dunson (Frontiers Neuroinformatics, 2019)

Structural mapping with fiber tractography of the human cuneate fasciculus at microscopic resolution in cervical region. - Ahmet Fatih Atik; Evan Calabrese; Robert Gramer; Syed M. Adil; Shervin Rahimpour; Promila Pagadala; G. Allan Johnson; Shivanand P. Lad (NeuroImage, 2019)

Small Animal Multivariate Brain Analysis (SAMBA) - a High Throughput Pipeline with a Validation Framework. - Robert J. Anderson; James J. Cook; Natalie A. Delpratt; John C. Nouls; Bin Gu; James O. McNamara; Brian B. Avants; G. Allan Johnson; Alexandra Badea (Neuroinformatics, 2019)

Variability and heritability of mouse brain structure: Microscopic MRI atlases and connectomes for diverse strains. - Nian Wang 003; Robert J. Anderson; David G. Ashbrook; Vivek Gopalakrishnan; Youngser Park; Carey E. Priebe; Yi Qi; Rick Laoprasert; Joshua T. Vogelstein; Robert W. Williams; G. Allan Johnson (NeuroImage, 2020)

Cytoarchitecture of the mouse brain by high resolution diffusion magnetic resonance imaging. - Nian Wang 003; Leonard E. White; Yi Qi; Gary P. Cofer; G. Allan Johnson (NeuroImage, 2020)

A high-resolution interactive atlas of the human brainstem using magnetic resonance imaging. - Syed M. Adil; Evan Calabrese; Lefko T. Charalambous; James J. Cook; Shervin Rahimpour; Ahmet Fatih Atik; Gary P. Cofer; Beth A. Parente; G. Allan Johnson; Shivanand P. Lad; Leonard E. White (NeuroImage, 2021)

A multicontrast MR atlas of the Wistar rat brain. - G. Allan Johnson; Rick Laoprasert; Robert J. Anderson; Gary P. Cofer; James J. Cook; Forrest Pratson; Leonard E. White (NeuroImage, 2021)

Resolution and b value dependent structural connectome in ex vivo mouse brain. - Stephanie Crater; Surendra Maharjan; Yi Qi; Qi Zhao; Gary P. Cofer; James C. Cook; G. Allan Johnson; Nian Wang 003 (NeuroImage, 2022)

High-resolution diffusion magnetic resonance imaging and spatial-transcriptomic in developing mouse brain. - Xinyue Han; Surendra Maharjan; Jie Chen; Yi Zhao; Yi Qi; Leonard E. White; G. Allan Johnson; Nian Wang 003 (NeuroImage, 2024)