GENFOCS - A Comparative Tool on Gene Finding with Sensitivity and Specificity. - M. A. Lijo Anto; G. Gopakumar 001; Achuthsankar S. Nair; Indira Ghosh (BIRD, 2008)

Collaboration in offshore software projects: practices and challenges. - Gopakumar Gopalakrishnan 001; Sreekumar Pillai; Nidhi Dhanju (IWIC, 2009)

GEN-SNiP: An Online Tool to Find Polymorphisms in a Genome. - David B. Whyte; Gopakumar Gopalakrishnan Nair; Achuthsankar S. Nair; Oommen V. Oommen (Silico Biol., 2009)

Lacunarity Analysis of Protein Sequences Reveal Fractal Like Behavior of Amino Acid Distributions. - G. Gopakumar 001; Achuthsankar S. Nair (ACC (1), 2011)

A GPU Based Maximum Common Subgraph Algorithm for Drug Discovery Applications. - P. B. Jayaraj; K. Rahamathulla; G. Gopakumar 001 (IPDPS Workshops, 2016)

An Optimal Seed Based Compression Algorithm for DNA Sequences. - Pamela Vinitha Eric; Gopakumar Gopalakrishnan 001; Muralikrishnan Karunakaran (Adv. Bioinformatics, 2016)

GPURFSCREEN: a GPU based virtual screening tool using random forest classifier. - P. B. Jayaraj; Mathias K. Ajay; M. Nufail; G. Gopakumar 001; U. C. Abdul Jaleel (J. Cheminformatics, 2016)

A tf-idf based topic model for identifying lncRNAs from genomic background. - Manu Madhavan; G. Gopakumar 001 (SAC, 2018)

Function prediction of cancer-related LncRNAs using heterogeneous information network model. - P. V. Sunil Kumar; M. Manju; G. Gopakumar 001 (Int. J. Data Min. Bioinform., 2018)

Inferring disease and pathway associations of long non-coding RNAs using heterogeneous information network model. - P. V. Sunil Kumar; G. Gopakumar 001 (J. Bioinform. Comput. Biol., 2019)

Deep Belief Network based representation learning for lncRNA-disease association prediction. - Manu Madhavan; G. Gopakumar 001 (CoRR, 2020)

An integrated method for identifying essential proteins from multiplex network model of protein-protein interactions. - K. Athira; G. Gopakumar 001 (J. Bioinform. Comput. Biol., 2020)

A GPU based virtual screening tool using SOM. - P. B. Jayaraj; K. M. Mithun; G. Gopakumar 001; U. C. Abdul Jaleel (Int. J. Comput. Biol. Drug Des., 2021)

DBNLDA: Deep Belief Network based representation learning for lncRNA-disease association prediction. - Manu Madhavan; G. Gopakumar 001 (Appl. Intell., 2022)

A Heterogeneous Information Network Model for Long Non-Coding RNA Function Prediction. - P. V. Sunil Kumar; Adheeba Thahsin; Manju M; G. Gopakumar 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Computational Drug Repurposing Using Power Graph Analysis of Integrated Drug-Target-Disease Network. - P. H. Nishamol; Sourav Bandyopadhyay; G. Gopakumar 001 (IEEE Access, 2023)