Regulation of nuclear morphology by actomyosin components and cell geometry. - Nisha M. Ramdas; Qingsen Li; G. V. Shivashankar (EMBC, 2015)

Network Analysis Identifies Regulatory Hotspots in Regions of Chromosome Interactions. - Anastasiya Belyaeva; Saradha Venkatachalapathy; Mallika Nagarajan; G. V. Shivashankar; Caroline Uhler (BCB, 2017)

Predicting cell lineages using autoencoders and optimal transport. - Karren D. Yang; Karthik Damodaran; Saradha Venkatachalapathy; Ali Soylemezoglu; G. V. Shivashankar; Caroline Uhler (PLoS Comput. Biol., 2020)

Machine Learning Approaches to Single-Cell Data Integration and Translation. - Caroline Uhler; G. V. Shivashankar (Proc. IEEE, 2022)