Improved prediction of critical residues for protein function based on network and phylogenetic analyses. - Boris Thibert; Dale E. Bredesen; Gabriel del Rio (BMC Bioinform., 2005)

Computer-Based Screening of Functional Conformers of Proteins. - Héctor Marlosti Montiel Molina; César Millán-Pacheco; Nina Pastor; Gabriel del Rio (PLoS Comput. Biol., 2008)

How to identify essential genes from molecular networks? - Gabriel del Rio; Dirk Koschützki; Gerardo Coello (BMC Syst. Biol., 2009)

Yeast Mating and Image-Based Quantification of Spatial Pattern Formation. - Christian Diener; Gabriele Schreiber; Wolfgang Giese; Gabriel del Rio; Andreas Schröder 001; Edda Klipp (PLoS Comput. Biol., 2014)

Machine Learnable Fold Space Representation based on Residue Cluster Classes. - Ricardo Corral-Corral; Edgar Chávez; Gabriel del Rio (Comput. Biol. Chem., 2015)

Effective Design of Multifunctional Peptides by Combining Compatible Functions. - Christian Diener; Georgina Garza Ramos Martínez; Daniel Moreno Blas; David A. Castillo González; Gerardo Corzo; Susana Castro-Obregon; Gabriel del Rio (PLoS Comput. Biol., 2016)

Residue Cluster Classes: A Unified Protein Representation for Efficient Structural and Functional Classification. - Fernando Fontove; Gabriel del Rio (Entropy, 2020)

Challenges in the Computational Modeling of the Protein Structure - Activity Relationship. - Gabriel del Rio (Comput., 2021)