A variational Bayes algorithm for fast and accurate multiple locus genome-wide association analysis. - Benjamin A. Logsdon; Gabriel E. Hoffman; Jason G. Mezey (BMC Bioinform., 2010)

Mouse obesity network reconstruction with a variational Bayes algorithm to employ aggressive false positive control. - Benjamin A. Logsdon; Gabriel E. Hoffman; Jason G. Mezey (BMC Bioinform., 2012)

PUMA: A Unified Framework for Penalized Multiple Regression Analysis of GWAS Data. - Gabriel E. Hoffman; Benjamin A. Logsdon; Jason G. Mezey (PLoS Comput. Biol., 2013)

lrgpr: interactive linear mixed model analysis of genome-wide association studies with composite hypothesis testing and regression diagnostics in R. - Gabriel E. Hoffman; Jason G. Mezey; Eric E. Schadt (Bioinform., 2014)

Comparative analyses of population-scale phenomic data in electronic medical records reveal race-specific disease networks. - Benjamin S. Glicksberg; Li Li 062; Marcus A. Badgeley; Khader Shameer; Roman Kosoy; Noam D. Beckmann; Nam Pho; Jörg Hakenberg; Meng Ma; Kristin L. Ayers; Gabriel E. Hoffman; Shuyu Dan Li; et al. (Bioinform., 2016)

variancePartition: interpreting drivers of variation in complex gene expression studies. - Gabriel E. Hoffman; Eric E. Schadt (BMC Bioinform., 2016)

ORE identifies extreme expression effects enriched for rare variants. - Felix Richter 002; Gabriel E. Hoffman; K. B. Manheimer; Nihir Patel; A J. Sharp; D. McKean; Sarah U. Morton; S. DePalma; J. Gorham; A Kitaygorodksy; George A. Porter; A Giardini; et al. (Bioinform., 2019)

decorate: differential epigenetic correlation test. - Gabriel E. Hoffman; Jaroslav Bendl; Kiran Girdhar; Panos Roussos (Bioinform., 2020)

Dream: powerful differential expression analysis for repeated measures designs. - Gabriel E. Hoffman; Panos Roussos (Bioinform., 2021)