pyKVFinder: an efficient and integrable Python package for biomolecular cavity detection and characterization in data science. - João Victor da Silva Guerra; Helder Veras Ribeiro filho; Gabriel Ernesto Jara; Leandro Oliveira Bortot; José Geraldo de Carvalho Pereira; Paulo Sérgio Lopes-de-Oliveira (BMC Bioinform., 2021)

Structural dynamics of SARS-CoV-2 nucleocapsid protein induced by RNA binding. - Helder Veras Ribeiro filho; Gabriel Ernesto Jara; Fernanda Aparecida Heleno Batista; Gabriel Ravanhani Schleder; Celisa Caldana Costa Tonoli; Adriana Santos Soprano; Samuel Leite Guimarães; Antonio Carlos Borges; Alexandre Cassago; Marcio Chaim Bajgelman; Rafael Elias Marques; Daniela Barretto Barbosa Trivella; et al. (PLoS Comput. Biol., 2022)

Exploring the potential of structure-based deep learning approaches for T cell receptor design. - Helder Veras Ribeiro filho; Gabriel Ernesto Jara; João Victor da Silva Guerra; Melyssa Cheung; Nathaniel R. Felbinger; José Geraldo de Carvalho Pereira; Brian G. Pierce; Paulo Sérgio Lopes-de-Oliveira (PLoS Comput. Biol., 2024)