On Being a Machine: A Review. - Gabriel Valiente (AI Mag., 1991)

On Knowledge Base Redundancy Under Uncertain Reasoning. - Gabriel Valiente (IPMU, 1992)

Using Layered Support Graphs for Verifying External Adequacy in Rule-Based Expert Systems. - Gabriel Valiente (SIGART Bull., 1992)

Input-Driven Control of Rule-Based Expert Systems. - Gabriel Valiente (ISMIS, 1993)

A Partial Algebras Approach to Graph Transformation. - Ricardo Alberich; Peter Burmeister; Francesc Rosselló; Gabriel Valiente; Boleslaw Wojdylo (TAGT, 1994)

Hypergraph rewriting using conformisms. - Miquel Monserrat; Francesc Rosselló; Joan Torrens; Gabriel Valiente (SEGRAGRA, 1995)

Algebraic Transformation of Unary Partial Algebras I: Double-Pushout Approach. - Peter Burmeister; Francesc Rosselló; Joan Torrens; Gabriel Valiente (Theor. Comput. Sci., 1997)

Redundancy and Subsumption in High-Level Replacement Systems. - Hans-Jörg Kreowski; Gabriel Valiente (TAGT, 1998)

Algebraic Transformation of Unary Partial Algebras II: Single-Pushout Approach. - Peter Burmeister; Miquel Monserrat; Francesc Rosselló; Gabriel Valiente (Theor. Comput. Sci., 1999)

A Relational View of Subgraph Isomorphism. - Jordi Cortadella; Gabriel Valiente (RelMiCS, 2000)

An Image Similarity Measure Based on Graph Matching. - Ricardo A. Baeza-Yates; Gabriel Valiente (SPIRE, 2000)

A General Method for Graph Isomorphism. - Gabriel Valiente (FCT, 2001)

An Efficient Bottom-Up Distance between Trees. - Gabriel Valiente (SPIRE, 2001)

A graph distance metric combining maximum common subgraph and minimum common supergraph. - Mirtha-Lina Fernández; Gabriel Valiente (Pattern Recognit. Lett., 2001)

Algorithms on Trees and Graphs - Gabriel Valiente (Springer, 2002)

Constraint Satisfaction Algorithms for Graph Pattern Matching. - Javier Larrosa; Gabriel Valiente (Math. Struct. Comput. Sci., 2002)

A New Simple Algorithm for the Maximum-Weight Independent Set Problem on Circle Graphs. - Gabriel Valiente (ISAAC, 2003)

On the Algorithm of Berztiss for Tree Pattern Matching. - Gabriel Valiente (ENC, 2004)

Analysis of Metabolic Pathways by Graph Transformation. - Francesc Rosselló; Gabriel Valiente (ICGT, 2004)

Artificial Chemistries and Metabolic Pathways. - Liliana Félix; Francesc Rosselló; Gabriel Valiente (Spanish Bioinformatics Conference, 2004)

On Supertrees of Phylogenetic Trees. - Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (Spanish Bioinformatics Conference, 2004)

Chemical Graphs, Chemical Reaction Graphs, and Chemical Graph Transformation. - Francesc Rosselló; Gabriel Valiente (GraBaTs, 2004)

Trading uninitialized space for time. - Gabriel Valiente (Inf. Process. Lett., 2004)

Graph Transformation in Molecular Biology. - Francesc Rosselló; Gabriel Valiente (Formal Methods in Software and Systems Modeling, 2005)

Optimal Artificial Chemistries and Metabolic Pathways. - Liliana Félix; Gabriel Valiente; Francesc Rosselló (ENC, 2005)

A Fast Algorithmic Technique for Comparing Large Phylogenetic Trees. - Gabriel Valiente (SPIRE, 2005)

An edit script for taxonomic classifications. - Roderic D. M. Page; Gabriel Valiente (BMC Bioinform., 2005)

On the Ancestral Compatibility of Two Phylogenetic Trees with Nested Taxa - Mercè Llabrés; Jairo Rocha; Francesc Rosselló; Gabriel Valiente (CoRR, 2005)

Constrained tree inclusion. - Gabriel Valiente (J. Discrete Algorithms, 2005)

The transposition distance for phylogenetic trees - Francesc Rosselló; Gabriel Valiente (CoRR, 2006)

An algebraic view of the relation between largest common subtrees and smallest common supertrees. - Francesc Rosselló; Gabriel Valiente (Theor. Comput. Sci., 2006)

Reconstructing Metabolic Pathways by Bidirectional Chemical Search. - Liliana Félix; Francesc Rosselló; Gabriel Valiente (CMSB, 2007)

Seeded Tree Alignment and Planar Tanglegram Layout. - Antoni Lozano; Ron Y. Pinter; Oleg Rokhlenko; Gabriel Valiente; Michal Ziv-Ukelson (WABI, 2007)

Phylogenetic reconstruction from non-genomic data. - José Carlos Clemente; Kenji Satou; Gabriel Valiente (Bioinform., 2007)

Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment. - Paolo Ferragina; Raffaele Giancarlo; Valentina Greco; Giovanni Manzini; Gabriel Valiente (BMC Bioinform., 2007)

Tripartitions do not always discriminate phylogenetic networks - Gabriel Cardona; Francesc Rosselló; Gabriel Valiente (CoRR, 2007)

Linear structure of bipartite permutation graphs and the longest path problem. - Ryuhei Uehara; Gabriel Valiente (Inf. Process. Lett., 2007)

Efficient Algorithms on Trees and Graphs with Unique Node Labels. - Gabriel Valiente (Applied Graph Theory in Computer Vision and Pattern Recognition, 2007)

Bubbles: Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs. - Michael Sammeth; Gabriel Valiente; Roderic Guigó (RECOMB, 2008)

A distance metric for a class of tree-sibling phylogenetic networks. - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (Bioinform., 2008)

A perl package and an alignment tool for phylogenetic networks. - Gabriel Cardona; Francesc Rosselló; Gabriel Valiente (BMC Bioinform., 2008)

Extended Newick: it is time for a standard representation of phylogenetic networks. - Gabriel Cardona; Francesc Rosselló; Gabriel Valiente (BMC Bioinform., 2008)

Nodal distances for rooted phylogenetic trees. - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (CoRR, 2008)

A Distance Metric for Tree-Sibling Time Consistent Phylogenetic Networks - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (CoRR, 2008)

Seeded Tree Alignment. - Antoni Lozano; Ron Y. Pinter; Oleg Rokhlenko; Gabriel Valiente; Michal Ziv-Ukelson (IEEE ACM Trans. Comput. Biol. Bioinform., 2008)

Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R. - Gabriel Valiente (CRC Press, 2009)

An algebraic metric for phylogenetic trees. - Ricardo Alberich; Gabriel Cardona; Francesc Rosselló; Gabriel Valiente (Appl. Math. Lett., 2009)

Optimized ancestral state reconstruction using Sankoff parsimony. - José Carlos Clemente; Kazuho Ikeo; Gabriel Valiente; Takashi Gojobori (BMC Bioinform., 2009)

The comparison of tree-sibling time consistent phylogenetic networks is graph isomorphism-complete - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (CoRR, 2009)

All that Glisters is not Galled - Francesc Rosselló; Gabriel Valiente (CoRR, 2009)

Metrics for Phylogenetic Networks I: Generalizations of the Robinson-Foulds Metric. - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Metrics for Phylogenetic Networks II: Nodal and Triplets Metrics. - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

On Nakhleh's Metric for Reduced Phylogenetic Networks. - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Comparison of Tree-Child Phylogenetic Networks. - Gabriel Cardona; Francesc Rosselló; Gabriel Valiente (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Accurate Taxonomic Assignment of Short Pyrosequencing Reads. - José Carlos Clemente; Jesper Jansson 001; Gabriel Valiente (Pacific Symposium on Biocomputing, 2010)

Characterization of phylogenetic networks with NetTest. - Miguel Arenas; Mateus Patricio; David Posada; Gabriel Valiente (BMC Bioinform., 2010)

An optimized TOPS+ comparison method for enhanced TOPS models. - Mallika Veeramalai; David R. Gilbert; Gabriel Valiente (BMC Bioinform., 2010)

Path lengths in tree-child time consistent hybridization networks. - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (Inf. Sci., 2010)

Computational challenges of sequence classification in microbiomic data. - Paolo Ribeca; Gabriel Valiente (Briefings Bioinform., 2011)

Flexible taxonomic assignment of ambiguous sequencing reads. - José Carlos Clemente; Jesper Jansson 001; Gabriel Valiente (BMC Bioinform., 2011)

CPM 2006. - Moshe Lewenstein; Gabriel Valiente (J. Discrete Algorithms, 2011)

Comparison of Galled Trees. - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Reference databases for taxonomic assignment in metagenomics. - Monica Santamaria; Bruno Fosso; Arianna Consiglio; Giorgio De Caro; Giorgio Grillo; Flavio Licciulli; Sabino Liuni; Marinella Marzano; Daniel Alonso-Alemany; Gabriel Valiente; Graziano Pesole (Briefings Bioinform., 2012)

Editorial. - Gabriel Valiente; Graziano Pesole (Briefings Bioinform., 2012)

Faster computation of the Robinson-Foulds distance between phylogenetic networks. - Tetsuo Asano; Jesper Jansson 001; Kunihiko Sadakane; Ryuhei Uehara; Gabriel Valiente (Inf. Sci., 2012)

Further Steps in TANGO: improved taxonomic assignment in metagenomics. - Daniel Alonso-Alemany; Aurélien Barré; Stefano Beretta 001; Paola Bonizzoni; Macha Nikolski; Gabriel Valiente (Bioinform., 2014)

BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS. - Bruno Fosso; Monica Santamaria; Marinella Marzano; Daniel Alonso-Alemany; Gabriel Valiente; Giacinto Donvito; Alfonso Monaco; Pasquale Notarangelo; Graziano Pesole (BMC Bioinform., 2015)

MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data. - Bruno Fosso; Monica Santamaria; Mattia D'Antonio; Domenica Lovero; Giacomo Corrado; Enrico Vizza; N. Pássaro; Anna Rosa Garbuglia; M. R. Capobianchi; Marco Crescenzi; Gabriel Valiente; Graziano Pesole (Bioinform., 2017)

Unbiased Taxonomic Annotation of Metagenomic Samples. - Bruno Fosso; Graziano Pesole; Francesc Rosselló; Gabriel Valiente (J. Comput. Biol., 2018)

A Generalized Robinson-Foulds Distance for Clonal Trees, Mutation Trees, and Phylogenetic Trees and Networks. - Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (BCB, 2020)

AligNet: alignment of protein-protein interaction networks. - Adrià Alcalà; Ricardo Alberich; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (BMC Bioinform., 2020)

Alignment of biological networks by integer linear programming: virus-host protein-protein interaction networks. - Mercè Llabrés; Gabriel Riera; Francesc Rosselló; Gabriel Valiente (BMC Bioinform., 2020)

The Generalized Robinson-Foulds Distance for Phylogenetic Trees. - Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (J. Comput. Biol., 2021)

Algorithms on Trees and Graphs - With Python Code, Second Edition - Gabriel Valiente (Springer, 2021)

Adjacency Maps and Efficient Graph Algorithms. - Gabriel Valiente (Algorithms, 2022)

The K-Robinson Foulds Measures for Labeled Trees. - Elahe Khayatian; Gabriel Valiente; Louxin Zhang (RECOMB-CG, 2023)

Minimizing External Vertices in Hypergraph Orientations. - Alberto José Ferrari; Valeria A. Leoni; Graciela L. Nasini; Gabriel Valiente (ISCO, 2024)

The k-Robinson-Foulds Dissimilarity Measures for Comparison of Labeled Trees. - Elahe Khayatian; Gabriel Valiente; Louxin Zhang (J. Comput. Biol., 2024)