rVISTA 2.0: evolutionary analysis of transcription factor binding sites. - Gabriela G. Loots; Ivan Ovcharenko (Nucleic Acids Res., 2004)

ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes. - Ivan Ovcharenko; Marcelo A. Nobrega; Gabriela G. Loots; Lisa Stubbs (Nucleic Acids Res., 2004)

CREME: Cis-Regulatory Module Explorer for the human genome. - Roded Sharan; Asa Ben-Hur; Gabriela G. Loots; Ivan Ovcharenko (Nucleic Acids Res., 2004)

Dcode.org anthology of comparative genomic tools. - Gabriela G. Loots; Ivan Ovcharenko (Nucleic Acids Res., 2005)

Array2BIO: from microarray expression data to functional annotation of co-regulated genes. - Gabriela G. Loots; Patrick S. G. Chain; Shalini Mabery; Amy Rasley; Emilio Garcia; Ivan Ovcharenko (BMC Bioinform., 2006)

ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes. - Gabriela G. Loots; Ivan Ovcharenko (Bioinform., 2007)