ArrayExpress update - from an archive of functional genomics experiments to the atlas of gene expression. - Helen E. Parkinson; Misha Kapushesky; Nikolay Kolesnikov; Gabriella Rustici; Mohammadreza Shojatalab; Niran Abeygunawardena; Hugo Bérubé; Miroslaw Dylag; Ibrahim Emam; Anna Farne; Ele Holloway; Margus Lukk; et al. (Nucleic Acids Res., 2009)

Gene Expression Atlas at the European Bioinformatics Institute. - Misha Kapushesky; Ibrahim Emam; Ele Holloway; Pavel Kurnosov; Andrey Zorin; James Malone; Gabriella Rustici; Eleanor Williams; Helen E. Parkinson; Alvis Brazma (Nucleic Acids Res., 2010)

ArrayExpress update - an archive of microarray and high-throughput sequencing-based functional genomics experiments. - Helen E. Parkinson; Ugis Sarkans; Nikolay Kolesnikov; Niran Abeygunawardena; Tony Burdett; Miroslaw Dylag; Ibrahim Emam; Anna Farne; Emma Hastings; Ele Holloway; Natalja Kurbatova; Margus Lukk; et al. (Nucleic Acids Res., 2011)

Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology. - Robert Hoehndorf; Midori A. Harris; Heinrich Herre; Gabriella Rustici; Georgios V. Gkoutos (Bioinform., 2012)

Gene Expression Atlas update - a value-added database of microarray and sequencing-based functional genomics experiments. - Misha Kapushesky; Tomasz Adamusiak; Tony Burdett; Aedín C. Culhane; Anna Farne; Alexey Filippov; Ele Holloway; Andrey Klebanov; Nataliya Kryvych; Natalja Kurbatova; Pavel Kurnosov; James Malone; et al. (Nucleic Acids Res., 2012)

The challenges of delivering bioinformatics training in the analysis of high-throughput data. - Benilton S. Carvalho; Gabriella Rustici (Briefings Bioinform., 2013)

ArrayExpress update - trends in database growth and links to data analysis tools. - Gabriella Rustici; Nikolay Kolesnikov; Marco Brandizi; Tony Burdett; Miroslaw Dylag; Ibrahim Emam; Anna Farne; Emma Hastings; Jon C. Ison; Maria Keays; Natalja Kurbatova; James Malone; et al. (Nucleic Acids Res., 2013)

Expression Atlas update - a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments. - Robert Petryszak; Tony Burdett; Benedetto Fiorelli; Nuno A. Fonseca; Mar Gonzalez-Porta; Emma Hastings; Wolfgang Huber; Simon Jupp; Maria Keays; Nataliya Kryvych; Julie A. McMurry; John C. Marioni; et al. (Nucleic Acids Res., 2014)

Cellular phenotype database: a repository for systems microscopy data. - Catherine Kirsanova; Alvis Brazma; Gabriella Rustici; Ugis Sarkans (Bioinform., 2015)

ArrayExpress update - simplifying data submissions. - Nikolay Kolesnikov; Emma Hastings; Maria Keays; Olga Melnichuk; Y. Amy Tang; Eleanor Williams; Miroslaw Dylag; Natalja Kurbatova; Marco Brandizi; Tony Burdett; Karyn Megy; Ekaterina Pilicheva; et al. (Nucleic Acids Res., 2015)

The digital revolution in phenotyping. - Anika Oellrich; Nigel Collier; Tudor Groza; Dietrich Rebholz-Schuhmann; Nigam Shah; Olivier Bodenreider; Mary Regina Boland; Ivo I. Georgiev; Hongfang Liu; Kevin M. Livingston; Augustin Luna; Ann-Marie Mallon; et al. (Briefings Bioinform., 2016)

The cellular microscopy phenotype ontology. - Simon Jupp; James Malone; Tony Burdett; Jean-Karim Hériché; Eleanor Williams; Jan Ellenberg; Helen E. Parkinson; Gabriella Rustici (J. Biomed. Semant., 2016)

Training in High-Throughput Sequencing: Common Guidelines to Enable Material Sharing, Dissemination, and Reusability. - Bastian Schiffthaler; Myrto Kostadima; NGS Trainer Consortium; Nicolas Delhomme; Gabriella Rustici (PLoS Comput. Biol., 2016)

Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee). - Lonnie R. Welch; Cath Brooksbank; Russell Schwartz; Sarah L. Morgan; Bruno A. Gaëta; Alastair M. Kilpatrick; Daniel Mietchen; Benjamin L. Moore; Nicola J. Mulder; Mark A. Pauley; William R. Pearson; Predrag Radivojac; et al. (PLoS Comput. Biol., 2016)

Evaluation of the Influence of Computational Resources on Transcriptome de Novo Assembly Variability and Quality. - Patricia Carvajal López; Fernando Daniel Von Borstel Luna; Joaquín Gutiérrez Jagüey; Humberto Mejía Ruíz; Gabriella Rustici; Eduardo Romero Vivas (Computación y Sistemas, 2018)

The development and application of bioinformatics core competencies to improve bioinformatics training and education. - Nicola J. Mulder; Russell Schwartz; Michelle D. Brazas; Cath Brooksbank; Bruno A. Gaëta; Sarah L. Morgan; Mark A. Pauley; Anne G. Rosenwald; Gabriella Rustici; Michael L. Sierk; Tandy J. Warnow; Lonnie R. Welch (PLoS Comput. Biol., 2018)

A new pan-European Train-the-Trainer programme for bioinformatics: pilot results on feasibility, utility and sustainability of learning. - Allegra Via; Teresa K. Attwood; Pedro L. Fernandes; Sarah L. Morgan; Maria Victoria Schneider; Patricia M. Palagi; Gabriella Rustici; Rochelle E. Tractenberg (Briefings Bioinform., 2019)

Ten simple rules for making training materials FAIR. - Leyla J. García; Bérénice Batut; Melissa L. Burke; Mateusz Kuzak; Fotis E. Psomopoulos; Ricardo Arcila; Teresa K. Attwood; Niall Beard; Denise Carvalho-Silva; Alexandros C. Dimopoulos; Victoria Dominguez Del Angel; Michel Dumontier; et al. (PLoS Comput. Biol., 2020)

A framework to assess the quality and impact of bioinformatics training across ELIXIR. - Kim T. Gurwitz; Prakash Singh Gaur; Louisa J. Bellis; Lee D. Larcombe; Eva Alloza; Balint Laszlo Balint; Alexander Botzki; Jure Dimec; Victoria Dominguez Del Angel; Pedro L. Fernandes; Eija Korpelainen; Roland Krause; et al. (PLoS Comput. Biol., 2020)

Microarray-Based Quality Assessment as a Supporting Criterion for de novo Transcriptome Assembly Selection. - Patricia Carvajal López; Fernando D. Von Borstel; Amada Torres; Gabriella Rustici; Joaquín Gutiérrez; Eduardo Romero Vivas (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)