Modified Association Rule Mining Approach for the MHC-Peptide Binding Problem. - Galip Gürkan Yardimci; Alper Küçükural; Yücel Saygin; Osman Ugur Sezerman (ISCIS, 2006)

Predictive model of 3D domain formation via CTCF-mediated extrusion. - Galip Gürkan Yardimci; William Stafford Noble (Proc. Natl. Acad. Sci. USA, 2015)

HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps. - Koon-Kiu Yan; Galip Gürkan Yardimci; Chengfei Yan; William S. Noble; Mark Gerstein (Bioinform., 2017)

Unsupervised embedding of single-cell Hi-C data. - Jie Liu 045; Dejun Lin; Galip Gürkan Yardimci; William Stafford Noble (Bioinform., 2018)

GenomeDISCO: a concordance score for chromosome conformation capture experiments using random walks on contact map graphs. - Oana Ursu; Nathan Boley; Maryna Taranova; Y. X. Rachel Wang; Galip Gürkan Yardimci; William Stafford Noble; Anshul Kundaje (Bioinform., 2018)

Inferring Diploid 3D Chromatin Structures from Hi-C Data. - Alexandra Gesine Cauer; Gürkan Yardimci; Jean-Philippe Vert; Nelle Varoquaux; William Stafford Noble (WABI, 2019)

Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data. - Hyeon-Jin Kim; Galip Gürkan Yardimci; Giancarlo Bonora; Vijay Ramani; Jie Liu 045; Ruolan Qiu; Choli Lee; Jennifer Hesson; Carol B. Ware; Jay Shendure; Zhi-jun Duan; William Stafford Noble (PLoS Comput. Biol., 2020)