How to Train good Word Embeddings for Biomedical NLP. - Billy Chiu; Gamal K. O. Crichton; Anna Korhonen; Sampo Pyysalo (BioNLP@ACL, 2016)

Attending to Characters in Neural Sequence Labeling Models. - Marek Rei; Gamal K. O. Crichton; Sampo Pyysalo (COLING, 2016)

A neural network multi-task learning approach to biomedical named entity recognition. - Gamal K. O. Crichton; Sampo Pyysalo; Billy Chiu; Anna Korhonen (BMC Bioinform., 2017)

Neural networks for link prediction in realistic biomedical graphs: a multi-dimensional evaluation of graph embedding-based approaches. - Gamal K. O. Crichton; Yufan Guo; Sampo Pyysalo; Anna Korhonen (BMC Bioinform., 2018)