Computing Opportunities in the Era of Abundant Biological Data. - Gane Ka-Shu Wong (SC, 2004)

BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics. - Wenming Zhao; Jing Wang 003; Ximiao He; Xiaobing Huang; Yongzhi Jiao; Mingtao Dai; Shulin Wei; Jian Fu; Ye Chen; Xiaoyu Ren; Yong Zhang 036; Peixiang Ni; et al. (Nucleic Acids Res., 2004)

ChickVD: a sequence variation database for the chicken genome. - Jing Wang 003; Ximiao He; Jue Ruan; Mingtao Dai; Jie Chen; Yong Zhang 036; Yafeng Hu; Chen Ye; Shengting Li; Lijuan Cong; Lin Fang; Bin Liu; et al. (Nucleic Acids Res., 2005)

SilkDB: a knowledgebase for silkworm biology and genomics. - Jing Wang 003; Qingyou Xia; Ximiao He; Mingtao Dai; Jue Ruan; Jie Chen; Guo Yu; Haifeng Yuan; Yafeng Hu; Ruiqiang Li; Tao Feng; Chen Ye; et al. (Nucleic Acids Res., 2005)

ReAS: Recovery of Ancestral Sequences for Transposable Elements from the Unassembled Reads of a Whole Genome Shotgun. - Ruiqiang Li; Jia Ye; Songgang Li; Jing Wang 003; Yujun Han; Chen Ye; Jian Wang 065; Huanming Yang; Jun Yu 004; Gane Ka-Shu Wong; Jun Wang 004 (PLoS Comput. Biol., 2005)

KaKs_Calculator: Calculating Ka and Ks Through Model Selection and Model Averaging. - Zhang Zhang 002; Jun Li 051; Xiao-Qian Zhao; Jun Wang 004; Gane Ka-Shu Wong; Jun Yu 004 (Genom. Proteom. Bioinform., 2006)

TreeFam: a curated database of phylogenetic trees of animal gene families. - Heng Li 002; Avril Coghlan; Jue Ruan; Lachlan James M. Coin; Jean-Karim Hériché; Lara Osmotherly; Ruiqiang Li; Tao Liu; Zhang Zhang 002; Lars Bolund; Gane Ka-Shu Wong; Wei-Mou Zheng; et al. (Nucleic Acids Res., 2006)

A cross-species alignment tool (CAT). - Heng Li 002; Liang Guan; Tao Liu; Yiran Guo; Wei-Mou Zheng; Gane Ka-Shu Wong; Jun Wang 004 (BMC Bioinform., 2007)

Evolutionary Transients in the Rice Transcriptome. - Jun Wang 004; Jianguo Zhang; Ruiqiang Li; Hongkun Zheng; Jun Li 051; Yong Zhang 036; Heng Li 002; Peixiang Ni; Songgang Li; Shengting Li; Jingqiang Wang; Dongyuan Liu; et al. (Genom. Proteom. Bioinform., 2010)

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads. - Yinlong Xie; Gengxiong Wu; Jingbo Tang; Ruibang Luo; Jordan Patterson; Shanlin Liu; Weihua Huang; Guangzhu He; Shengchang Gu; Shengkang Li; Xin Zhou; Tak Wah Lam; et al. (Bioinform., 2014)