DDBASE2.0: updated domain database with improved identification of structural domains. - A. Vinayagam; Jiye Shi; Ganesan Pugalenthi; B. Meenakshi 004; Tom L. Blundell; Ramanathan Sowdhamini (Bioinform., 2003)

PASS2: an automated database of protein alignments organised as structural superfamilies. - Anirban Bhaduri; Ganesan Pugalenthi; Ramanathan Sowdhamini (BMC Bioinform., 2004)

iMOT: an interactive package for the selection of spatially interacting motifs. - Anirban Bhaduri; Ganesan Pugalenthi; Nitin Gupta 002; Ramanathan Sowdhamini (Nucleic Acids Res., 2004)

SDBASE: a consortium of native and modelled disulphide bonds in proteins. - A. Vinayagam; Ganesan Pugalenthi; R. Rajesh; Ramanathan Sowdhamini (Nucleic Acids Res., 2004)

SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs. - Saikat Chakrabarti 001; Prem A. Anand; Nitin Bhardwaj; Ganesan Pugalenthi; Ramanathan Sowdhamini (Nucleic Acids Res., 2005)

DIAL: a web-based server for the automatic identification of structural domains in proteins. - Ganesan Pugalenthi; Govindaraju Archunan; Ramanathan Sowdhamini (Nucleic Acids Res., 2005)

GenDiS: Genomic Distribution of protein structural domain Superfamilies. - Ganesan Pugalenthi; Anirban Bhaduri; Ramanathan Sowdhamini (Nucleic Acids Res., 2005)

SSToSS - Sequence-Structural Templates of Single-Member Superfamilies. - Saikat Chakrabarti 001; Gowri Manohari; Ganesan Pugalenthi; Ramanathan Sowdhamini (Silico Biol., 2006)

iMOTdb - a comprehensive collection of spatially interacting motifs in proteins. - Ganesan Pugalenthi; Anirban Bhaduri; Ramanathan Sowdhamini (Nucleic Acids Res., 2006)

HARMONY: a server for the assessment of protein structures. - Ganesan Pugalenthi; Khader Shameer; Narayanaswamy Srinivasan; Ramanathan Sowdhamini (Nucleic Acids Res., 2006)

SMotif: a server for structural motifs in proteins. - Ganesan Pugalenthi; Ponnuthurai N. Suganthan; Ramanathan Sowdhamini; Saikat Chakrabarti 001 (Bioinform., 2007)

A machine learning approach for the identification of odorant binding proteins from sequence-derived properties. - Ganesan Pugalenthi; E. Ke Tang; Ponnuthurai N. Suganthan; Govindaraju Archunan; Ramanathan Sowdhamini (BMC Bioinform., 2007)

Prediction of Transcription Factor Families Using DNA Sequence Features. - Ashish Anand; Gary B. Fogel; Ganesan Pugalenthi; Ponnuthurai N. Suganthan (PRIB, 2008)

MegaMotifBase: a database of structural motifs in protein families and superfamilies. - Ganesan Pugalenthi; Ponnuthurai N. Suganthan; Ramanathan Sowdhamini; Saikat Chakrabarti 001 (Nucleic Acids Res., 2008)

Identification of structurally conserved residues of proteins in absence of structural homologs using neural network ensemble. - Ganesan Pugalenthi; E. Ke Tang; Ponnuthurai N. Suganthan; Saikat Chakrabarti 001 (Bioinform., 2009)

Identification and analysis of transcription factor family-specific features derived from DNA and protein information. - Ashish Anand; Ganesan Pugalenthi; Gary B. Fogel; Ponnuthurai N. Suganthan (Pattern Recognit. Lett., 2010)

3DSwap: curated knowledgebase of proteins involved in 3D domain swapping. - Khader Shameer; Prashant Shingate; S. C. P. Manjunath; M. Karthika; Ganesan Pugalenthi; Ramanathan Sowdhamini (Database J. Biol. Databases Curation, 2011)

BLProt: Prediction of bioluminescent proteins based on Support Vector Machine and ReliefF feature selection. - Krishna Kumar Kandaswamy; Ganesan Pugalenthi; Mehrnaz Khodam Hazrati; Kai-Uwe Kalies; Thomas Martinetz (BMC Bioinform., 2011)