Systems Engineering and Metabolic Engineering: A Side-by-Side Comparison. - Joseph Johnnie; Mark Austin; Ganesh Sriram; Matt Conway; Ashish Misra (CSER, 2012)

Network component analysis provides quantitative insights on an Arabidopsis transcription factor-gene regulatory network. - Ashish Misra; Ganesh Sriram (BMC Syst. Biol., 2013)

Isotope-assisted metabolic flux analysis as an equality-constrained nonlinear program for improved scalability and robustness. - Daniel James Lugar; Ganesh Sriram (PLoS Comput. Biol., 2022)