SMNN: batch effect correction for single-cell RNA-seq data via supervised mutual nearest neighbor detection. - Yuchen Yang; Gang Li 034; Huijun Qian; Kirk C. Wilhelmsen; Yin Shen; Yun Li (Briefings Bioinform., 2021)

iSMNN: batch effect correction for single-cell RNA-seq data via iterative supervised mutual nearest neighbor refinement. - Yuchen Yang; Gang Li 034; Yifang Xie; Li Wang 026; Taylor M. Lagler; Yingxi Yang; Jiandong Liu; Li Qian; Yun Li (Briefings Bioinform., 2021)

A systematic evaluation of Hi-C data enhancement methods for enhancing PLAC-seq and HiChIP data. - Le Huang; Yuchen Yang; Gang Li 034; Minzhi Jiang; Jia Wen; Armen Abnousi; Jonathan D. Rosen; Ming Hu 001; Yun Li (Briefings Bioinform., 2022)

Software for Large Scale MMD-MA. - Laetitia Meng-Papaxanthos; Ran Zhang; Gang Li 034; Marco Cuturi; William Stafford Noble; Jean-Philippe Vert (Zenodo, 2022)

Generation of Anatomy-Realistic 4d Infant Brain Atlases with Tissue Maps Using Generative Adversarial Networks. - Kaibo Tang; Liangjun Chen; Zhengwang Wu; Fenqiang Zhao; Ya Wang; Weili Lin; Li Wang 026; Gang Li 034 (ISBI, 2024)

Enhancing Hi-C contact matrices for loop detection with Capricorn: a multiview diffusion model. - Tangqi Fang; Yifeng Liu 004; Addie Woicik; Minsi Lu; Anupama Jha; Xiao Wang 013; Gang Li 034; Borislav H. Hristov; Zixuan Liu 001; Hanwen Xu; William S. Noble; Sheng Wang 012 (Bioinform., 2024)