SnS-Align: a graphic tool for alignment of distantly related proteins. - Ganiraju Manyam; Ancha V. Baranova; Mikhail Skoblov; Rakesh K. Mishra (Int. J. Bioinform. Res. Appl., 2009)

Hierarchical Bayesian methods for integration of various types of genomics data. - Elizabeth M. Jennings; Jeffrey S. Morris; Raymond J. Carroll; Ganiraju Manyam; Veerabhadran Baladandayuthapani (GENSiPS, 2012)

targetHub: a programmable interface for miRNA-gene interactions. - Ganiraju Manyam; Cristina Ivan; George A. Calin; Kevin R. Coombes (Bioinform., 2013)

iBAG: integrative Bayesian analysis of high-dimensional multiplatform genomics data. - Wenting Wang; Veerabhadran Baladandayuthapani; Jeffrey S. Morris; Bradley M. Broom; Ganiraju Manyam; Kim-Anh Do (Bioinform., 2013)

Bayesian methods for expression-based integration of various types of genomics data. - Elizabeth M. Jennings; Jeffrey S. Morris; Raymond J. Carroll; Ganiraju Manyam; Veerabhadran Baladandayuthapani (EURASIP J. Bioinform. Syst. Biol., 2013)

Integrating multi-platform genomic data using hierarchical Bayesian relevance vector machines. - Sanvesh Srivastava; Wenyi Wang 001; Ganiraju Manyam; Carlos Ordonez 001; Veerabhadran Baladandayuthapani (EURASIP J. Bioinform. Syst. Biol., 2013)

KPP: KEGG Pathway Painter. - Ganiraju Manyam; Aybike Birerdinc; Ancha V. Baranova (BMC Syst. Biol., 2015)

Methylation-eQTL analysis in cancer research. - Yusha Liu; Keith A. Baggerly; Elias Orouji; Ganiraju Manyam; Huiqin Chen; Michael Lam; Jennifer S. Davis; Michael S. Lee; Bradley M. Broom; David G. Menter; Kunal Rai; Scott Kopetz; et al. (Bioinform., 2021)