Analysis and visualization of gene expression data using Self-Organizing Maps. - Janne Nikkilä; Petri Törönen; Samuel Kaski; Jarkko Venna; Eero Castrén; Garry Wong (Neural Networks, 2002)

Theme discovery from gene lists for identification and viewing of multiple functional groups. - Petri Pehkonen; Garry Wong; Petri Törönen (BMC Bioinform., 2005)

CROPPER: a metagene creator resource for cross-platform and cross-species compendium studies. - Jussi Paananen; Markus Storvik; Garry Wong (BMC Bioinform., 2006)

POXO: a web-enabled tool series to discover transcription factor binding sites. - Matti Kankainen; Petri Pehkonen; Päivi Rosenström; Petri Törönen; Garry Wong; Liisa Holm (Nucleic Acids Res., 2006)

FORG3D: Force-directed 3D graph editor for visualization of integrated genome scale data. - Jussi Paananen; Garry Wong (BMC Syst. Biol., 2009)

Varietas: a functional variation database portal. - Jussi Paananen; Robert Ciszek; Garry Wong (Database J. Biol. Databases Curation, 2010)

Heuristic Bayesian Segmentation for Discovery of Coexpressed Genes within Genomic Regions. - Petri Pehkonen; Garry Wong; Petri Törönen (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

Prediction of microRNA targets in Caenorhabditis elegans using a self-organizing map. - Liisa Heikkinen; Mikko Kolehmainen; Garry Wong (Bioinform., 2011)

TAFFEL: Independent Enrichment Analysis of gene sets. - Mitja I. Kurki; Jussi Paananen; Markus Storvik; Seppo Ylä-Herttuala; Juha E. Jääskeläinen; Mikael von und zu Fraunberg; Garry Wong; Petri Pehkonen (BMC Bioinform., 2011)

Predictive Text System for Bahasa with Frequency, n-gram, Probability Table and Syntactic using Grammar. - Derwin Suhartono; Garry Wong; Polim Kusuma; Silviana Saputra (ICAART (1), 2014)

Novel tumor biomarker based on isomiR expression profiles. - Liang Chen 021; Garry Wong (BIBM, 2017)

miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal. - Liang Chen 021; Liisa Heikkinen; Changliang Wang; Yang Yang; K. Emily Knott; Garry Wong (Database J. Biol. Databases Curation, 2018)

Trends in the development of miRNA bioinformatics tools. - Liang Chen 021; Liisa Heikkinen; Changliang Wang; Yang Yang; Huiyan Sun; Garry Wong (Briefings Bioinform., 2019)

Transcriptome Informatics. - Liang Chen 021; Garry Wong (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

The bioinformatics toolbox for circRNA discovery and analysis. - Liang Chen 021; Changliang Wang; Huiyan Sun; Juexin Wang; Yanchun Liang 001; Yan Wang 028; Garry Wong (Briefings Bioinform., 2021)

PIWI-interacting RNAs in human diseases: databases and computational models. - Tianjiao Zhang; Liang Chen 021; Rongzhen Li; Ning Liu; Xiaobing Huang; Garry Wong (Briefings Bioinform., 2022)

Mammalian piRNA target prediction using a hierarchical attention model. - Tianjiao Zhang; Liang Chen 021; Haibin Zhu 004; Garry Wong (BMC Bioinform., 2025)