A scalable and portable framework for massively parallel variable selection in genetic association studies. - Gary K. Chen (Bioinform., 2012)

Mendel-GPU: haplotyping and genotype imputation on graphics processing units. - Gary K. Chen; Kai Wang 063; Alex H. Stram; Eric M. Sobel; Kenneth Lange (Bioinform., 2012)

Precise inference of copy number alterations in tumor samples from SNP arrays. - Gary K. Chen; Xiao Chang; Christina Curtis; Kai Wang 063 (Bioinform., 2013)

Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation. - Bogdan Pasaniuc; Sriram Sankararaman; Dara G. Torgerson; Christopher Gignoux; Noah Zaitlen; Celeste Eng; William Rodriguez-Cintron; Rocio Chapela; Jean G. Ford; Pedro C. Avila; Jose Rodriguez-Santana; Gary K. Chen; et al. (Bioinform., 2013)

al3c: high-performance software for parameter inference using Approximate Bayesian Computation. - Alex H. Stram; Paul Marjoram; Gary K. Chen (Bioinform., 2015)

Convex Clustering: An Attractive Alternative to Hierarchical Clustering. - Gary K. Chen; Eric C. Chi; John M. O. Ranola; Kenneth Lange (PLoS Comput. Biol., 2015)

cit: hypothesis testing software for mediation analysis in genomic applications. - Joshua Millstein; Gary K. Chen; Carrie V. Breton (Bioinform., 2016)