Integrated gene and species phylogenies from unaligned whole genome protein sequences. - Gary W. Stuart; Karen Moffett; Steve Baker (Bioinform., 2002)

A Comprehensive Whole Genome Bacterial Phylogeny Using Correlated Peptide Motifs Defined in a High Dimensional Vector Space. - Gary W. Stuart; Michael W. Berry (J. Bioinform. Comput. Biol., 2003)

An SVD-based comparison of nine whole eukaryotic genomes supports a coelomate rather than ecdysozoan lineage. - Gary W. Stuart; Michael W. Berry (BMC Bioinform., 2004)

PolyLens: software for map-based visualisation and analysis of genome-scale polymorphism data. - Michael W. Berry; Tiantian Gao; Ryhan Pathan; Gary W. Stuart (Int. J. Comput. Biol. Drug Des., 2013)

Correlating Bladder Cancer Risk Genes with Their Targeting MicroRNAs Using MMiRNA-Tar. - Yang Liu; Steve Baker; Hui Jiang 002; Gary W. Stuart; Yongsheng Bai (Genom. Proteom. Bioinform., 2015)

Dissecting the biological relationship between TCGA miRNA and mRNA sequencing data using MMiRNA-Viewer. - Yongsheng Bai; Lizhong Ding 002; Steve Baker; Jenny M. Bai; Ethan Rath; Feng Jiang; Jianghong Wu; Hui Jiang 002; Gary W. Stuart (BMC Bioinform., 2016)