Application of Graph Clustering and Visualisation Methods to Analysis of Biomolecular Data. - Edgars Celms; Karlis Cerans; Karlis Freivalds; Paulis Kikusts; Lelde Lace; Gatis Melkus; Martins Opmanis; Darta Rituma; Peteris Rucevskis; Juris Viksna (DB&IS, 2018)

Graph-based Characterisations of Cell Types and Functionally Related Modules in Promoter Capture Hi-C Data. - Lelde Lace; Gatis Melkus; Peteris Rucevskis; Edgars Celms; Karlis Cerans; Paulis Kikusts; Martins Opmanis; Darta Rituma; Juris Viksna (BIOINFORMATICS, 2019)

Characteristic Topological Features of Promoter Capture Hi-C Interaction Networks. - Lelde Lace; Gatis Melkus; Peteris Rucevskis; Edgars Celms; Karlis Cerans; Paulis Kikusts; Martins Opmanis; Darta Rituma; Juris Viksna (BIOSTEC (Selected Papers), 2019)

Topological structure analysis of chromatin interaction networks. - Juris Viksna; Gatis Melkus; Edgars Celms; Karlis Cerans; Karlis Freivalds; Paulis Kikusts; Lelde Lace; Martins Opmanis; Darta Rituma; Peteris Rucevskis (BMC Bioinform., 2019)

Network motif-based analysis of regulatory patterns in paralogous gene pairs. - Gatis Melkus; Peteris Rucevskis; Edgars Celms; Karlis Cerans; Karlis Freivalds; Paulis Kikusts; Lelde Lace; Martins Opmanis; Darta Rituma; Juris Viksna (J. Bioinform. Comput. Biol., 2020)

Hybrid Gene Regulation Models of Mammalian Circadian Cycles. - Lelde Lace; Karlis Cerans; Karlis Freivalds; Gatis Melkus; Juris Viksna (BIOINFORMATICS, 2022)

Behavioral dynamics of bacteriophage gene regulatory networks. - Gatis Melkus; Karlis Cerans; Karlis Freivalds; Lelde Lace; Darta Zajakina; Juris Viksna (J. Bioinform. Comput. Biol., 2022)

Clique-Based Topological Characterization of Chromatin Interaction Hubs. - Gatis Melkus; Sandra Silina; Andrejs Sizovs; Peteris Rucevskis; Lelde Lace; Edgars Celms; Juris Viksna (ISBRA, 2023)

Gene Expression Variability Linked to Chromatin Clique Configurations and cis-Regulatory Elements. - Gatis Melkus; Andrejs Sizovs; Sandra Silina; Peteris Rucevskis; Lelde Lace; Edgars Celms; Juris Viksna (ICCBB, 2024)

Exploration and Visualization Methods for Chromatin Interaction Data. - Andrejs Sizovs; Sandra Silina; Gatis Melkus; Peteris Rucevskis; Lelde Lace; Edgars Celms; Juris Viksna (ISBRA (1), 2024)

Transcriptional Hubs Within Cliques in Ensemble Hi-C Chromatin Interaction Networks. - Gatis Melkus; Andrejs Sizovs; Peteris Rucevskis; Sandra Silina (J. Comput. Biol., 2024)

A technique for preserving network structure in randomized Hi-C data. - Andrejs Sizovs; Gatis Melkus; Peteris Rucevskis; Sandra Silina; Lelde Lace; Edgars Celms; Juris Viksna (J. Bioinform. Comput. Biol., 2024)

Enhanced Graph Representations of Chromatin Interaction Networks. - Edgars Celms; Lelde Lace; Gatis Melkus; Peteris Rucevskis; Sandra Silina; Andrejs Sizovs; Juris Viksna (BIOSTEC (1), 2025)