Deformable Multi Template Matching with Application to Portal Images. - Martin Berger; Gaudenz Danuser (CVPR, 1997)

Parametric Model Fitting: From Inlier Characterization to Outlier Detection. - Gaudenz Danuser; Markus A. Stricker (IEEE Trans. Pattern Anal. Mach. Intell., 1998)

Super-Resolution Tracking of Weak Fluorescent Markers in 3D: Application in Dissecting Mechanics of Chromosome Segregation using Fluorescence Imaging and Molecular Genetics in Yeast. - Gaudenz Danuser (ISBI, 2004)

Reliable Tracking of Large Scale Dense Antiparallel Particle Motion for Fluorescence Live Cell Imaging. - Ge Yang; Alexandre Matov; Gaudenz Danuser (CVPR Workshops, 2005)

Guest Editorial. - R. Murphy; Erik Meijering; Gaudenz Danuser (IEEE Trans. Image Process., 2005)

Computer vision for systems biology. - Gaudenz Danuser (ISBI, 2006)

Tracking in molecular bioimaging. - Erik Meijering; Ihor Smal; Gaudenz Danuser (IEEE Signal Process. Mag., 2006)

Phenotypic clustering of yeast mutants based on kinetochore microtubule dynamics. - Khuloud Jaqaman; Jonas F. Dorn; Eugenio Marco; Peter K. Sorger; Gaudenz Danuser (Bioinform., 2007)

Quantitative analysis of border cell migration. - Shann-Ching Chen; Gaudenz Danuser (ACSCC, 2008)

Optimal-flow minimum-cost correspondence assignment in particle flow tracking. - Alexandre Matov; Marcus M. Edvall; Ge Yang; Gaudenz Danuser (Comput. Vis. Image Underst., 2011)

Piecewise-Stationary Motion Modeling and Iterative Smoothing to Track Heterogeneous Particle Motions in Dense Environments. - Philippe Roudot; Liya Ding 001; Khuloud Jaqaman; Charles Kervrann; Gaudenz Danuser (IEEE Trans. Image Process., 2017)

Profiling cellular morphodynamics by spatiotemporal spectrum decomposition. - Xiao Ma 025; Onur Dagliyan; Klaus M. Hahn; Gaudenz Danuser (PLoS Comput. Biol., 2018)

3D flow field estimation and assessment for live cell fluorescence microscopy. - Sandeep Manandhar; Patrick Bouthemy; Erik Welf; Gaudenz Danuser; Philippe Roudot; Charles Kervrann (Bioinform., 2020)

U-Hack Med Gap Year - A Virtual Undergraduate Internship Program in Computer-Assisted Healthcare and Biomedical Research. - Stephan Daetwyler; Hanieh Mazloom-Farsibaf; Gaudenz Danuser; Rebekah Craig (Frontiers Bioinform., 2021)

Fine-grained, nonlinear registration of live cell movies reveals spatiotemporal organization of diffuse molecular processes. - Xuexia Jiang; Tadamoto Isogai; Joseph Chi; Gaudenz Danuser (PLoS Comput. Biol., 2022)

Remeshing flexible membranes under the control of free energy. - Xinxin Wang; Gaudenz Danuser (PLoS Comput. Biol., 2022)

Cellular harmonics for the morphology-invariant analysis of molecular organization at the cell surface. - Hanieh Mazloom-Farsibaf; Qiongjing Zou; Rebecca Hsieh; Gaudenz Danuser; Meghan K. Driscoll (Nat. Comput. Sci., 2023)