Disentangling homeologous contigs in allo-tetraploid assembly: application to durum wheat. - Vincent Ranwez; Yan Holtz; Gautier Sarah; Morgane Ardisson; Sylvain Santoni; Sylvain Glemin; Muriel Tavaud-Pirra; Jacques David (BMC Bioinform., 2013)

SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations. - Alexis Dereeper; Felix Homa; Gwendoline Andres; Guilhem Sempéré; Gautier Sarah; Yann Hueber; Jean-François Dufayard; Manuel Ruiz (Nucleic Acids Res., 2015)

RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes. - Clément Agret; Annie Chateau; Gaëtan Droc; Gautier Sarah; Manuel Ruiz; Alban Mancheron (J. Open Source Softw., 2022)