SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors. - Rodrigo Goya; Mark G. F. Sun; Ryan D. Morin; Gillian Leung; Gavin Ha; Kimberley C. Wiegand; Janine Senz; Anamaria Crisan; Marco A. Marra; Martin Hirst; David G. Huntsman; Kevin P. Murphy; et al. (Bioinform., 2010)

deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data. - Andrew W. McPherson; Fereydoun Hormozdiari; Abdalnasser Zayed; Ryan Giuliany; Gavin Ha; Mark G. F. Sun; Malachi Griffith; Alireza Heravi Moussavi; Janine Senz; Nataliya Melnyk; Marina Pacheco; Marco A. Marra; et al. (PLoS Comput. Biol., 2011)

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data. - Andrew Roth; Jiarui Ding; Ryan D. Morin; Anamaria Crisan; Gavin Ha; Ryan Giuliany; Ali Bashashati; Martin Hirst; Gulisa Turashvili; Arusha Oloumi; Marco A. Marra; Sam Aparicio; et al. (Bioinform., 2012)

OntoLoki: an automatic, instance-based method for the evaluation of biological ontologies on the Semantic Web. - Benjamin M. Good; Gavin Ha; Chi K. Ho; Mark D. Wilkinson (CoRR, 2015)

Joint Inference of Genome Structure and Content in Heterogeneous Tumour Samples. - Andrew W. McPherson; Andrew Roth; Gavin Ha; Sohrab P. Shah; Cédric Chauve; Süleyman Cenk Sahinalp (CoRR, 2015)

The evolutionary history of 2,658 cancers. - Moritz Gerstung; Clemency Jolly; Ignaty Leshchiner; Stefan C. Dentro; Santiago Gonzalez; Thomas J. Mitchell; Yulia Rubanova; Pavana Anur; Kaixian Yu; Maxime Tarabichi; Amit G. Deshwar; Jeff Wintersinger; et al. (Nat., 2020)