Computational inference and analysis of genetic regulatory networks via a supervised combinatorial-optimization pattern. - Binhua Tang; Xuechen Wu; Ge Tan; Su-Shing Chen; Qing Jing; Bairong Shen (BMC Syst. Biol., 2010)

Blind spots of quantitative RNA-seq: the limits for assessing abundance, differential expression, and isoform switching. - Hubert Rehrauer; Lennart Opitz; Ge Tan; Lina Sieverling; Ralph Schlapbach (BMC Bioinform., 2013)

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles. - Anthony Mathelier; Xiaobei Zhao; Allen W. Zhang; François Parcy; Rebecca Worsley-Hunt; David J. Arenillas; Sorana Buchman; Chih-Yu Chen; Alice Yi Chou; Hans Ienasescu; Jonathan S. Lim; Casper Shyr; et al. (Nucleic Acids Res., 2014)

TFBSTools: an R/bioconductor package for transcription factor binding site analysis. - Ge Tan; Boris Lenhard (Bioinform., 2016)

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. - Anthony Mathelier; Oriol Fornes; David J. Arenillas; Chih-Yu Chen; Grégoire Denay; Jessica J. Y. Lee; Wenqiang Shi; Casper Shyr; Ge Tan; Rebecca Worsley-Hunt; Allen W. Zhang; François Parcy; et al. (Nucleic Acids Res., 2016)

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. - Aziz Khan 001; Oriol Fornes; Arnaud Stigliani; Marius Gheorghe; Jaime Abraham Castro-Mondragón; Robin van der Lee; Adrien Bessy; Jeanne Chèneby; Shubhada R. Kulkarni; Ge Tan; Damir Baranasic; David J. Arenillas; et al. (Nucleic Acids Res., 2018)

CNEr: A toolkit for exploring extreme noncoding conservation. - Ge Tan; Dimitris Polychronopoulos; Boris Lenhard (PLoS Comput. Biol., 2019)

JASPAR 2020: update of the open-access database of transcription factor binding profiles. - Oriol Fornes; Jaime Abraham Castro-Mondragón; Aziz Khan 001; Robin van der Lee; Xi Zhang; Phillip Andrew Richmond; Bhavi P. Modi; Solenne Correard; Marius Gheorghe; Damir Baranasic; Walter Santana-Garcia; Ge Tan; et al. (Nucleic Acids Res., 2020)

Retrieving Historical Images at 10-m Resolution From 1985 to 2015 Through STARS-Net: A Spatiotemporal Attention Referenced Super-Resolution Network. - Shuping Xiong; Xiuyuan Zhang; Haoyu Wang; Yichen Lei; Ge Tan; Shihong Du (IEEE Trans. Geosci. Remote. Sens., 2025)