The missing models: a data-driven approach for learning how networks grow. - Rob Patro; Geet Duggal; Emre Sefer; Hao Wang 024; Darya Filippova; Carl Kingsford (KDD, 2012)

Resolving Spatial Inconsistencies in Chromosome Conformation Data. - Geet Duggal; Rob Patro; Emre Sefer; Hao Wang 024; Darya Filippova; Samir Khuller; Carl Kingsford (WABI, 2012)

Graph rigidity reveals well-constrained regions of chromosome conformation embeddings. - Geet Duggal; Carl Kingsford (BMC Bioinform., 2012)

Topological properties of chromosome conformation graphs reflect spatial proximities within chromatin. - Hao Wang 024; Geet Duggal; Rob Patro; Michelle Girvan; Sridhar Hannenhalli; Carl Kingsford (BCB, 2013)

Multiscale Identification of Topological Domains in Chromatin. - Darya Filippova; Rob Patro; Geet Duggal; Carl Kingsford (WABI, 2013)

Resolving spatial inconsistencies in chromosome conformation measurements. - Geet Duggal; Rob Patro; Emre Sefer; Hao Wang 024; Darya Filippova; Samir Khuller; Carl Kingsford (Algorithms Mol. Biol., 2013)

Identification of alternative topological domains in chromatin. - Darya Filippova; Rob Patro; Geet Duggal; Carl Kingsford (Algorithms Mol. Biol., 2014)

Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations. - Emre Sefer; Geet Duggal; Carl Kingsford (J. Comput. Biol., 2016)