SeqFIRE: a web application for automated extraction of indel regions and conserved blocks from protein multiple sequence alignments. - Pravech Ajawatanawong; Gemma Catherine Atkinson; Nathan S. Watson-Haigh; Bryony MacKenzie; Sandra L. Baldauf (Nucleic Acids Res., 2012)

FlaGs and webFlaGs: discovering novel biology through the analysis of gene neighbourhood conservation. - Chayan Kumar Saha; Rodrigo Sanches Pires; Harald Brolin; Maxence Delannoy; Gemma Catherine Atkinson (Bioinform., 2021)

uORF4u: a tool for annotation of conserved upstream open reading frames. - Artyom A. Egorov; Gemma Catherine Atkinson (Bioinform., 2023)