Towards a large-scale biologically realistic model of the hippocampus. - Phillip J. Hendrickson; Gene J. Yu; Brian S. Robinson; Dong Song; Theodore W. Berger (EMBC, 2012)

Implementation of activity-dependent synaptic plasticity rules for a large-scale biologically realistic model of the hippocampus. - Brian S. Robinson; Gene J. Yu; Phillip J. Hendrickson; Dong Song; Theodore W. Berger (EMBC, 2012)

Implementation of topographically constrained connectivity for a large-scale biologically realistic model of the hippocampus. - Gene J. Yu; Brian S. Robinson; Phillip J. Hendrickson; Dong Song; Theodore W. Berger (EMBC, 2012)

The contribution of relative activation levels between populations of cells to network activity in a large-scale biologically realistic model of the hippocampus. - Phillip J. Hendrickson; Gene J. Yu; Brian S. Robinson; Dong Song; Theodore W. Berger (EMBC, 2013)

The role of topography in the transformation of spatiotemporal patterns by a large-scale, biologically realistic model of the rat dentate gyrus. - Gene J. Yu; Phillip J. Hendrickson; Brian S. Robinson; Dong Song; Theodore W. Berger (EMBC, 2013)

Implementation of the excitatory entorhinal-dentate-CA3 topography in a large-scale computational model of the rat hippocampus. - Gene J. Yu; Dong Song; Theodore W. Berger (EMBC, 2014)

A million-plus neuron model of the hippocampal dentate gyrus: Dependency of spatio-temporal network dynamics on topography. - Phillip J. Hendrickson; Gene J. Yu; Dong Song; Theodore W. Berger (EMBC, 2015)

Topography-dependent spatio-temporal correlations in the entorhinal-dentate-CA3 circuit in a large-scale computational model of the Rat Hippocampus. - Gene J. Yu; Phillip J. Hendrickson; Dong Song; Theodore W. Berger (EMBC, 2015)

A large-scale detailed neuronal model of electrical stimulation of the dentate gyrus and perforant path as a platform for electrode design and optimization. - Clayton S. Bingham; Kyle Loizos; Gene J. Yu; Andrew Gilbert; Jean-Marie Bouteiller; Dong Song; Gianluca Lazzi; Theodore W. Berger (EMBC, 2016)

Place field detection using grid-based clustering in a large-scale computational model of the rat dentate gyrus. - Gene J. Yu; Dong Song; Theodore W. Berger (EMBC, 2016)

A Million-Plus Neuron Model of the Hippocampal Dentate Gyrus: Critical Role for Topography in Determining Spatiotemporal Network Dynamics. - Phillip J. Hendrickson; Gene J. Yu; Dong Song; Theodore W. Berger (IEEE Trans. Biomed. Eng., 2016)

Point Process Filtering Estimates of Branching Rate for Neural Dendritic Morphology Generation. - Zane Z. Chou; Gene J. Yu; Theodore W. Berger (EMBC, 2018)

Modeling Nonlinear Synaptic Dynamics: A Laguerre-Volterra Network Framework for Improved Computational Efficiency in Large Scale Simulations. - Eric Y. Hu; Gene J. Yu; Dong Song; Jean-Marie C. Bouteiller; Theodore W. Berger (EMBC, 2018)

Model-Based Analysis of Electrode Placement and Pulse Amplitude for Hippocampal Stimulation. - Clayton S. Bingham; Kyle Loizos; Gene J. Yu; Andrew Gilbert; Jean-Marie C. Bouteiller; Dong Song; Gianluca Lazzi; Theodore W. Berger (IEEE Trans. Biomed. Eng., 2018)

Network Activity Due to Topographic Organization of Schaffer Collaterals in a Large-Scale Model of Rat CA1. - Gene J. Yu; Zhicheng Feng; Theodore W. Berger (EMBC, 2019)

Axonal Anatomy Optimizes Spatial Encoding in the Rat Entorhinal-Dentate System: A Computational Study. - Gene J. Yu; Jean-Marie C. Bouteiller; Dong Song; Theodore W. Berger (IEEE Trans. Biomed. Eng., 2019)

Generation of Granule Cell Dendritic Morphologies by Estimating the Spatial Heterogeneity of Dendritic Branching. - Zane Z. Chou; Gene J. Yu; Theodore W. Berger (Frontiers Comput. Neurosci., 2020)

A Computational Model of the Cholinergic Modulation of CA1 Pyramidal Cell Activity. - Adam Mergenthal; Jean-Marie C. Bouteiller; Gene J. Yu; Theodore W. Berger (Frontiers Comput. Neurosci., 2020)

Topographic Organization of Correlation Along the Longitudinal and Transverse Axes in Rat Hippocampal CA3 Due to Excitatory Afferents. - Gene J. Yu; Jean-Marie C. Bouteiller; Theodore W. Berger (Frontiers Comput. Neurosci., 2020)

Bridging Hierarchies in Multi-Scale Models of Neural Systems: Look-Up Tables Enable Computationally Efficient Simulations of Non-linear Synaptic Dynamics. - Duy-Tan J. Pham; Gene J. Yu; Jean-Marie C. Bouteiller; Theodore W. Berger (Frontiers Comput. Neurosci., 2021)

Circuits and mechanisms for TMS-induced corticospinal waves: Connecting sensitivity analysis to the network graph. - Gene J. Yu; Federico Ranieri; Vincenzo Di Lazzaro; Marc A. Sommer; Angel V. Peterchev; Warren M. Grill 001 (PLoS Comput. Biol., 2024)