Maximum Entropy Modeling of Short Sequence Motifs with Applications to RNA Splicing Signals. - Gene W. Yeo; Christopher B. Burge (J. Comput. Biol., 2004)

RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons. - William G. Fairbrother; Gene W. Yeo; Rufang Yeh; Paul Goldstein; Matthew Mawson; Phillip A. Sharp; Christopher B. Burge (Nucleic Acids Res., 2004)

Alternative Splicing Events Identified in Human Embryonic Stem Cells and Neural Progenitors. - Gene W. Yeo; Xiangdong Xu; Tiffany Y. Liang; Alysson R. Muotri; Christian T. Carson; Nicole G. Coufal; Fred H. Gage (PLoS Comput. Biol., 2007)

Analysis of Single Cells on a Pseudotime Scale along Postnatal Pancreatic Beta Cell Development. - Francesca Mulas; Chun Zeng; Yinghui Sui; Tiffany Guan; Nathanael Miller; Yuliang Tan; Fenfen Liu; Wen Jin; Andrea C. Carrano; Mark O. Huising; Orian Shirihai; Gene W. Yeo; et al. (BCB, 2017)

Session introduction. - Lana X. Garmire; Guo-Cheng Yuan; Rong Fan; Gene W. Yeo; John Quackenbush (PSB, 2019)

RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins. - Louis Philip Benoit Bouvrette; Xiaofeng Wang; Jonathan Boulais; Jian Kong; Easin Uddin Syed; Steven M. Blue; Lijun Zhan; Sara Olson; Rebecca Stanton; Xintao Wei; Brian Yee; Eric L. Van nostrand; et al. (Nucleic Acids Res., 2023)

FLARE: a fast and flexible workflow for identifying RNA editing foci. - Eric Kofman; Brian Yee; Hugo C. Medina-Munoz; Gene W. Yeo (BMC Bioinform., 2023)

EvidenceBench: A Benchmark for Extracting Evidence from Biomedical Papers. - Jianyou Wang; Weili Cao; Kaicheng Wang; Xiaoyue Wang; Ashish Dalvi; Gino Prasad; Qishan Liang; Hsuan-lin Her; Ming Wang; Qin Yang; Gene W. Yeo; David E. Neal; et al. (CoRR, 2025)