Parameter estimation of kinetic models from metabolic profiles: two-phase dynamic decoupling method. - Gengjie Jia; Gregory Stephanopoulos; Rudiyanto Gunawan (Bioinform., 2011)

Incremental parameter estimation of kinetic metabolic network models. - Gengjie Jia; Gregory Stephanopoulos; Rudiyanto Gunawan (BMC Syst. Biol., 2012)

The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci. - Gengjie Jia; Yu Li 006; Xue Zhong; Kanix Wang; Milton Pividori; Rabab Alomairy; Aniello Esposito; Hatem Ltaief; Chikashi Terao; Masato Akiyama; Koichi Matsuda; David E. Keyes; et al. (Nat. Comput. Sci., 2023)

Author Correction: The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci. - Gengjie Jia; Yu Li 006; Xue Zhong; Kanix Wang; Milton Pividori; Rabab Alomairy; Aniello Esposito; Hatem Ltaief; Chikashi Terao; Masato Akiyama; Koichi Matsuda; David E. Keyes; et al. (Nat. Comput. Sci., 2023)

Progress and opportunities of foundation models in bioinformatics. - Qing Li 075; Zhihang Hu; Yixuan Wang; Lei Li 051; Yimin Fan; Irwin King; Gengjie Jia; Sheng Wang; Le Song; Yu Li 006 (Briefings Bioinform., 2024)

An effective encoding of human medical conditions in disease space provides a versatile framework for deciphering disease associations. - Tianxin Xu; Yu Li 006; Xin Gao 001; Andrey Rzhetsky; Gengjie Jia (Quant. Biol., 2025)