Development of Machine Learning Model for Selecting the 1st Coil in the Treatment of Cerebral Aneurysms by Coil Embolization. - Soichiro Fujimura; Toshiki Koshiba; Genki Kudo; Kohei Takeshita; Masahiro Kazama; Kostadin Karagiozov; Koji Fukudome; Hiroyuki Takao; Hayato Ohwada; Yuichi Murayama; Makoto Yamamoto; Toshihiro Ishibashi; et al. (EMBC, 2023)

Pocket to concavity: a tool for the refinement of protein-ligand binding site shape from alpha spheres. - Genki Kudo; Takumi Hirao; Ryunosuke Yoshino; Yasuteru Shigeta; Takatsugu Hirokawa (Bioinform., 2023)

AAp-MSMD: Amino Acid Preference Mapping on Protein-Protein Interaction Surfaces Using Mixed-Solvent Molecular Dynamics. - Genki Kudo; Keisuke Yanagisawa; Ryunosuke Yoshino; Takatsugu Hirokawa (J. Chem. Inf. Model., 2023)

Optimizing Coil Selection for Cerebral Aneurysm Treatment Using PyRadiomics and Machine Learning Models. - Toshiki Koshiba; Soichiro Fujimura; Genki Kudo; Kohei Takeshita; Masahiro Kazama; Haruki Kanebayashi; Kostadin Karagiozov; Niken Prasasti Martono; Hiroyuki Takao; Makoto Yamamoto; Yuichi Murayama; Toshihiro Ishibashi; et al. (EMBC, 2024)

Site Identification and Next Choice Protocol for Hit-to-Lead Optimization. - Genki Kudo; Takumi Hirao; Ryunosuke Yoshino; Yasuteru Shigeta; Takatsugu Hirokawa (J. Chem. Inf. Model., 2024)

CrypToth: Cryptic Pocket Detection through Mixed-Solvent Molecular Dynamics Simulations-Based Topological Data Analysis. - Jun Koseki; Chie Motono; Keisuke Yanagisawa; Genki Kudo; Ryunosuke Yoshino; Takatsugu Hirokawa; Kenichiro Imai (J. Chem. Inf. Model., 2025)

Construction of PROTAC-Mediated Ternary Complex Structure Distribution Profiles Using Extensive Conformational Search. - Genki Kudo; Takumi Hirao; Ryuhei Harada; Yasuteru Shigeta; Takatsugu Hirokawa; Ryunosuke Yoshino (J. Chem. Inf. Model., 2025)