Consensus generation and variant detection by Celera Assembler. - Gennady Denisov; Brian Walenz; Aaron L. Halpern; Jason R. Miller; Nelson Axelrod; Samuel Levy; Granger G. Sutton (Bioinform., 2008)

A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads. - Tobias Rausch; Sergey Koren; Gennady Denisov; David Weese; Anne-Katrin Emde; Andreas Döring 001; Knut Reinert (Bioinform., 2009)

A Genome-Scale Metabolic Reconstruction of Mycoplasma genitalium, iPS189. - Patrick F. Suthers; Madhukar S. Dasika; Vinay Satish Kumar; Gennady Denisov; John I. Glass; Costas D. Maranas (PLoS Comput. Biol., 2009)

Model-based Detection and Analysis of Animal Behaviors using Signals Extracted by Automated Tracking. - Gennady Denisov; Tomoko Ohyama; Tihana Jovanic; Marta Zlatic (BIOSIGNALS, 2013)

Joint Deformable Registration of Large EM Image Volumes: A Matrix Solver Approach. - Khaled Khairy; Gennady Denisov; Stephan Saalfeld (CoRR, 2018)