RNA velocity unraveled. - Gennady Gorin; Meichen Fang; Tara Chari; Lior Pachter (PLoS Comput. Biol., 2022)

Biophysically interpretable inference of cell types from multimodal sequencing data. - Tara Chari; Gennady Gorin; Lior Pachter (Nat. Comput. Sci., 2024)

Trajectory inference from single-cell genomics data with a process time model. - Meichen Fang; Gennady Gorin; Lior Pachter (PLoS Comput. Biol., 2025)