rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations. - Julia V. Ponomarenko; Tatyana I. Merkulova; Gennady V. Vasiliev; Zoya B. Levashova; Galina Orlova; Sergey V. Lavryushev; Oleg N. Fokin; Mikhail P. Ponomarenko; Anatoly S. Frolov; Akinori Sarai (Nucleic Acids Res., 2001)

Mining Genome Variation to Associate Genetic Disease with Mutation Alterations and Ortho/Paralogous Polimorphysms in Transcription Factor Binding Site. - Julia V. Ponomarenko; Galina Orlova; Tatyana I. Merkulova; Gennady V. Vasiliev; Mikhail P. Ponomarenko (Int. J. Artif. Intell. Tools, 2005)

Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes. - Nikolay A. Kolchanov; Tatyana I. Merkulova; Elena V. Ignatieva; Elena A. Ananko; Dmitry Yu. Oshchepkov; Victor G. Levitsky; Gennady V. Vasiliev; Nataly V. Klimova; Vasily M. Merkulov; T. Charles Hodgman (Briefings Bioinform., 2007)

Hidden heterogeneity of transcription factor binding sites: A case study of SF-1. - Victor G. Levitsky; Dmitry Yu. Oshchepkov; Nataly V. Klimova; Elena V. Ignatieva; Gennady V. Vasiliev; Vasily M. Merkulov; Tatyana I. Merkulova (Comput. Biol. Chem., 2016)

Computer Analysis of Glioma Transcriptome Profiling: Alternative Splicing Events. - Vladimir N. Babenko; Natalya V. Gubanova; Anatoly O. Bragin; Irina V. Chadaeva; Gennady V. Vasiliev; Irina V. Medvedeva 001; Alexey S. Gaytan; Alexey L. Krivoshapkin; Yuriy L. Orlov (J. Integr. Bioinform., 2017)