Differential network analysis for the identification of condition-specific pathway activity and regulation. - Gennaro Gambardella; Maria Nicoletta Moretti; Rossella de Cegli; Luca Cardone; Adriano Peron; Diego di Bernardo (Bioinform., 2013)

A reverse-engineering approach to dissect post-translational modulators of transcription factor's activity from transcriptional data. - Gennaro Gambardella; Ivana Peluso; Sandro Montefusco; Mukesh Bansal; Diego L. Medina; Neil D. Lawrence; Diego di Bernardo (BMC Bioinform., 2015)

MEGA-V: detection of variant gene sets in patient cohorts. - Gennaro Gambardella; Matteo Cereda; Lorena Benedetti; Francesca D. Ciccarelli (Bioinform., 2017)