Efficient Algorithms for Counting and Reporting Segregating Sites in Genomic Sequences. - Manolis Christodoulakis; Geoffrey Brian Golding; Costas S. Iliopoulos; Yoan José Pinzón Ardila; William F. Smyth (J. Comput. Biol., 2007)

Inferring sequence regions under functional divergence in duplicate genes. - Yi-Fei Huang 004; Geoffrey Brian Golding (Bioinform., 2012)

BOND: Basic OligoNucleotide Design. - Lucian Ilie; Hamid Mohamadi; Geoffrey Brian Golding; William F. Smyth (BMC Bioinform., 2013)

Phylogenetic Gaussian Process Model for the Inference of Functionally Important Regions in Protein Tertiary Structures. - Yi-Fei Huang 004; Geoffrey Brian Golding (PLoS Comput. Biol., 2014)

FuncPatch: a web server for the fast Bayesian inference of conserved functional patches in protein 3D structures. - Yi-Fei Huang 004; Geoffrey Brian Golding (Bioinform., 2015)

markophylo: Markov chain analysis on phylogenetic trees. - Utkarsh J. Dang; Geoffrey Brian Golding (Bioinform., 2016)

DELPHI: accurate deep ensemble model for protein interaction sites prediction. - Yiwei Li; Geoffrey Brian Golding; Lucian Ilie (Bioinform., 2021)

LANDMark: an ensemble approach to the supervised selection of biomarkers in high-throughput sequencing data. - Josip Rudar; Teresita M. Porter; Michael Wright; Geoffrey Brian Golding; Mehrdad Hajibabaei (BMC Bioinform., 2022)

Computing Maximal Covers for Protein Sequences. - Geoffrey Brian Golding; Holly Koponen; Neerja Mhaskar; W. F. Smyth (J. Comput. Biol., 2023)

Scoring alignments by embedding vector similarity. - Sepehr Ashrafzadeh; Geoffrey Brian Golding; Silvana Ilie; Lucian Ilie (Briefings Bioinform., 2024)

Seq-InSite: sequence supersedes structure for protein interaction site prediction. - Seyedmohsen Hosseini; Geoffrey Brian Golding; Lucian Ilie (Bioinform., 2024)