Parallel Netwon-Krylov Methods for PDE-Constrained Optimization. - George Biros; Omar Ghattas (SC, 1999)

Parallel multiscale Gauss-Newton-Krylov methods for inverse wave propagation. - Volkan Akcelik; George Biros; Omar Ghattas (SC, 2002)

High Resolution Forward And Inverse Earthquake Modeling on Terascale Computers. - Volkan Akcelik; Jacobo Bielak; George Biros; Ioannis Epanomeritakis; Antonio Fernandez; Omar Ghattas; Eui Joong Kim; Julio C. López 001; David R. O'Hallaron; Tiankai Tu; John Urbanic (SC, 2003)

A New Parallel Kernel-Independent Fast Multipole Method. - Lexing Ying; George Biros; Denis Zorin; Harper Langston (SC, 2003)

A Framework for Online Inversion-Based 3D Site Characterization. - Volkan Akcelik; Jacobo Bielak; George Biros; Ioannis Epanomeritakis; Omar Ghattas; Loukas F. Kallivokas; Eui Joong Kim (International Conference on Computational Science, 2004)

Dynamic Data-Driven Inversion For Terascale Simulations: Real-Time Identification Of Airborne Contaminants. - Volkan Akcelik; George Biros; Andrei Draganescu; Judith Hill; Omar Ghattas; Bart G. van Bloemen Waanders (SC, 2005)

Parallel Lagrange-Newton-Krylov-Schur Methods for PDE-Constrained Optimization. Part I: The Krylov-Schur Solver. - George Biros; Omar Ghattas (SIAM J. Sci. Comput., 2005)

Parallel Lagrange-Newton-Krylov-Schur Methods for PDE-Constrained Optimization. Part II: The Lagrange-Newton Solver and Its Application to Optimal Control of Steady Viscous Flows. - George Biros; Omar Ghattas (SIAM J. Sci. Comput., 2005)

Parallel Algorithms for PDE-Constrained Optimization. - Volkan Akçelik; George Biros; Omar Ghattas; Judith Hill; David E. Keyes; Bart G. van Bloemen Waanders (Parallel Processing for Scientific Computing, 2006)

Inversion of Airborne Contaminants in a Regional Model. - Volkan Akcelik; George Biros; Andrei Draganescu; Omar Ghattas; Judith Hill; Bart G. van Bloemen Waanders (International Conference on Computational Science (3), 2006)

Correspondence detection in diffusion tensor images. - Christos Davatzikos; Feby Abraham; George Biros; Ragini Verma (ISBI, 2006)

Estimating myocardial fiber orientations by template warping. - Hari Sundar; Dinggang Shen; George Biros; Harold Litt; Christos Davatzikos (ISBI, 2006)

A high-order 3D boundary integral equation solver for elliptic PDEs in smooth domains. - Lexing Ying; George Biros; Denis Zorin (J. Comput. Phys., 2006)

Modeling Glioma Growth and Mass Effect in 3D MR Images of the Brain. - Cosmina Hogea; Christos Davatzikos; George Biros (MICCAI (1), 2007)

Robust Computation of Mutual Information Using Spatially Adaptive Meshes. - Hari Sundar; Dinggang Shen; George Biros; Chenyang Xu 001; Christos Davatzikos (MICCAI (1), 2007)

Low-constant parallel algorithms for finite element simulations using linear octrees. - Hari Sundar; Rahul S. Sampath; Santi S. Adavani; Christos Davatzikos; George Biros (SC, 2007)

A High-Order Solver for the Heat Equation in 1D domains with Moving Boundaries. - Shravan K. Veerapaneni; George Biros (SIAM J. Sci. Comput., 2007)

Parallel optimization of tumor model parameters for fast registration of brain tumor images. - Evangelia I. Zacharaki; Cosmina S. Hogea; Dinggang Shen; George Biros; Christos Davatzikos (Image Processing, 2008)

Dendro: parallel algorithms for multigrid and AMR methods on 2: 1 balanced octrees. - Rahul S. Sampath; Santi S. Adavani; Hari Sundar; Ilya Lashuk; George Biros (SC, 2008)

The Chebyshev fast Gauss and nonuniform fast Fourier transforms and their application to the evaluation of distributed heat potentials. - Shravan K. Veerapaneni; George Biros (J. Comput. Phys., 2008)

Multigrid Algorithms for Inverse Problems with Linear Parabolic PDE Constraints. - Santi S. Adavani; George Biros (SIAM J. Sci. Comput., 2008)

Brain–Tumor Interaction Biophysical Models for Medical Image Registration. - Cosmina Hogea; Christos Davatzikos; George Biros (SIAM J. Sci. Comput., 2008)

Bottom-Up Construction and 2: 1 Balance Refinement of Linear Octrees in Parallel. - Hari Sundar; Rahul S. Sampath; George Biros (SIAM J. Sci. Comput., 2008)

A Comparative Study of Biomechanical Simulators in Deformable Registration of Brain Tumor Images. - Evangelia I. Zacharaki; Cosmina Hogea; George Biros; Christos Davatzikos (IEEE Trans. Biomed. Eng., 2008)

An Inverse Scattering Algorithm for the Segmentation of the Luminal Border on Intravascular Ultrasound Data. - Eduardo Gerardo Mendizabal Ruiz; George Biros; Ioannis A. Kakadiaris (MICCAI (1), 2009)

Biomechanically-Constrained 4D Estimation of Myocardial Motion. - Hari Sundar; Christos Davatzikos; George Biros (MICCAI (1), 2009)

A numerical method for simulating the dynamics of 3D axisymmetric vesicles suspended in viscous flows. - Shravan K. Veerapaneni; Denis Gueyffier; George Biros; Denis Zorin (J. Comput. Phys., 2009)

A boundary integral method for simulating the dynamics of inextensible vesicles suspended in a viscous fluid in 2D. - Shravan K. Veerapaneni; Denis Gueyffier; Denis Zorin; George Biros (J. Comput. Phys., 2009)

Corrigendum to "Non-diffeomorphic registration of brain tumor images by simulating tissue loss and tumor growth" [NeuroImage 46 (2009) 762-774]. - Evangelia I. Zacharaki; Cosmina Hogea; Dinggang Shen; George Biros; Christos Davatzikos (NeuroImage, 2009)

Non-diffeomorphic registration of brain tumor images by simulating tissue loss and tumor growth. - Evangelia I. Zacharaki; Cosmina Hogea; Dinggang Shen; George Biros; Christos Davatzikos (NeuroImage, 2009)

An EM algorithm for brain tumor image registration: A tumor growth modeling based approach. - Ali Gooya; George Biros; Christos Davatzikos (CVPR Workshops, 2010)

Optimizing and tuning the fast multipole method for state-of-the-art multicore architectures. - Aparna Chandramowlishwaran; Samuel Williams 001; Leonid Oliker; Ilya Lashuk; George Biros; Richard W. Vuduc (IPDPS, 2010)

Petascale Direct Numerical Simulation of Blood Flow on 200K Cores and Heterogeneous Architectures. - Abtin Rahimian; Ilya Lashuk; Shravan K. Veerapaneni; Aparna Chandramowlishwaran; Dhairya Malhotra; Logan Moon; Rahul S. Sampath; Aashay Shringarpure; Jeffrey S. Vetter; Richard W. Vuduc; Denis Zorin; George Biros (SC, 2010)

Dynamic simulation of locally inextensible vesicles suspended in an arbitrary two-dimensional domain, a boundary integral method. - Abtin Rahimian; Shravan K. Veerapaneni; George Biros (J. Comput. Phys., 2010)

Fast Algorithms for Source Identification Problems with Elliptic PDE Constraints. - Santi S. Adavani; George Biros (SIAM J. Imaging Sci., 2010)

A Parallel Geometric Multigrid Method for Finite Elements on Octree Meshes. - Rahul S. Sampath; George Biros (SIAM J. Sci. Comput., 2010)

Joint Segmentation and Deformable Registration of Brain Scans Guided by a Tumor Growth Model. - Ali Gooya; Kilian M. Pohl; Michel Bilello; George Biros; Christos Davatzikos (MICCAI (2), 2011)

Towards Extra-Luminal Blood Detection from Intravascular Ultrasound Radio Frequency Data. - Eduardo Gerardo Mendizabal Ruiz; George Biros; Ioannis A. Kakadiaris (MICCAI (1), 2011)

Poster: parallel algorithms for clustering and nearest neighbor search problems in high dimensions. - Logan Moon; Daniel Long; Shreyas Joshi; Vyomkesh Tripathi; Bo Xiao 001; George Biros (SC Companion, 2011)

A fast algorithm for simulating vesicle flows in three dimensions. - Shravan K. Veerapaneni; Abtin Rahimian; George Biros; Denis Zorin (J. Comput. Phys., 2011)

Deformable Registration of Glioma Images Using EM Algorithm and Diffusion Reaction Modeling. - Ali Gooya; George Biros; Christos Davatzikos (IEEE Trans. Medical Imaging, 2011)

Parallel geometric-algebraic multigrid on unstructured forests of octrees. - Hari Sundar; George Biros; Carsten Burstedde; Johann Rudi; Omar Ghattas; Georg Stadler (SC, 2012)

A massively parallel adaptive fast multipole method on heterogeneous architectures. - Ilya Lashuk; Aparna Chandramowlishwaran; Harper Langston; Tuan-Anh Nguyen; Rahul S. Sampath; Aashay Shringarpure; Richard W. Vuduc; Lexing Ying; Denis Zorin; George Biros (Commun. ACM, 2012)

FaIMS: A fast algorithm for the inverse medium problem with multiple frequencies and multiple sources for the scalar Helmholtz equation. - Stéphanie Chaillat; George Biros (J. Comput. Phys., 2012)

Dynamic Data Driven Methods for Self-aware Aerospace Vehicles. - Douglas L. Allaire; George Biros; J. Chambers; Omar Ghattas; D. Kordonowy; Karen Willcox (ICCS, 2012)

GLISTR: Glioma Image Segmentation and Registration. - Ali Gooya; Kilian M. Pohl; Michel Bilello; Luigi Cirillo; George Biros; Elias R. Melhem; Christos Davatzikos (IEEE Trans. Medical Imaging, 2012)

HykSort: a new variant of hypercube quicksort on distributed memory architectures. - Hari Sundar; Dhairya Malhotra; George Biros (ICS, 2013)

A geodesic-active-contour-based variational model for short-axis cardiac MR image segmentation. - Wei Zhu 003; Sung Ha Kang; George Biros (Int. J. Comput. Math., 2013)

Performance analysis of HPC applications with irregular tree data structures. - Ahmed Khawaja; Jiajun Wang; Andreas Gerstlauer; Lizy K. John; Dhairya Malhotra; George Biros (ICPADS, 2014)

A Volume Integral Equation Stokes Solver for Problems with Variable Coefficients. - Dhairya Malhotra; Amir Gholami; George Biros (SC, 2014)

FFT, FMM, or MULTIGRID? A comparative study of state-of-the-art poisson solvers. - Amir Gholami; Dhairya Malhotra; Hari Sundar; George Biros (CoRR, 2014)

Far-Field Compression for Fast Kernel Summation Methods in High Dimensions. - William B. March; George Biros (CoRR, 2014)

High-volume fraction simulations of two-dimensional vesicle suspensions. - Bryan D. Quaife; George Biros (J. Comput. Phys., 2014)

An Algebraic Parallel Treecode in Arbitrary Dimensions. - William B. March; Bo Xiao 001; Chenhan D. Yu; George Biros (IPDPS, 2015)

Robust Treecode Approximation for Kernel Machines. - William B. March; Bo Xiao 001; Sameer Tharakan; Chenhan D. Yu; George Biros (KDD, 2015)

A kernel-independent FMM in general dimensions. - William B. March; Bo Xiao 001; Sameer Tharakan; Chenhan D. Yu; George Biros (SC, 2015)

Performance optimization for the k-nearest neighbors kernel on x86 architectures. - Chenhan D. Yu; Jianyu Huang; Woody Austin; Bo Xiao 001; George Biros (SC, 2015)

AccFFT: A library for distributed-memory FFT on CPU and GPU architectures. - Amir Gholami; Judith Hill; Dhairya Malhotra; George Biros (CoRR, 2015)

Controlling the deformation map in diffeomorphic image registration. - Andreas Mang; George Biros (CoRR, 2015)

Boundary integral method for the flow of vesicles with viscosity contrast in three dimensions. - Abtin Rahimian; Shravan K. Veerapaneni; Denis Zorin; George Biros (J. Comput. Phys., 2015)

On preconditioners for the Laplace double-layer in 2D. - Bryan D. Quaife; George Biros (Numer. Linear Algebra Appl., 2015)

Comparison of multigrid algorithms for high-order continuous finite element discretizations. - Hari Sundar; Georg Stadler; George Biros (Numer. Linear Algebra Appl., 2015)

An Inexact Newton-Krylov Algorithm for Constrained Diffeomorphic Image Registration. - Andreas Mang; George Biros (SIAM J. Imaging Sci., 2015)

ASKIT: Approximate Skeletonization Kernel-Independent Treecode in High Dimensions. - William B. March; Bo Xiao 001; George Biros (SIAM J. Sci. Comput., 2015)

Optimizing GPGPU Kernel Summation for Performance and Energy Efficiency. - Jiajun Wang; Ahmed Khawaja; George Biros; Andreas Gerstlauer; Lizy K. John (ICPP Workshops, 2016)

INV-ASKIT: A Parallel Fast Direct Solver for Kernel Matrices. - Chenhan D. Yu; William B. March; Bo Xiao 001; George Biros (IPDPS, 2016)

A parallel arbitrary-order accurate AMR algorithm for the scalar advection-diffusion equation. - Arash Bakhtiari; Dhairya Malhotra; Amir Raoofy; Miriam Mehl; Hans-Joachim Bungartz; George Biros (SC, 2016)

Distributed-memory large deformation diffeomorphic 3D image registration. - Andreas Mang; Amir Gholami; George Biros (SC, 2016)

Research and Education in Computational Science and Engineering. - Ulrich Rüde; Karen Willcox; Lois Curfman McInnes; Hans De Sterck; George Biros; Hans-Joachim Bungartz; James Corones; Evin Cramer; James Crowley; Omar Ghattas; Max D. Gunzburger; Michael Hanke; et al. (CoRR, 2016)

Inv-ASKIT: A Parallel Fast Diret Solver for Kernel Matrices. - Chenhan D. Yu; William B. March; Bo Xiao 001; George Biros (CoRR, 2016)

Adaptive time stepping for vesicle suspensions. - Bryan D. Quaife; George Biros (J. Comput. Phys., 2016)

Constrained H1-Regularization Schemes for Diffeomorphic Image Registration. - Andreas Mang; George Biros (SIAM J. Imaging Sci., 2016)

FFT, FMM, or Multigrid? A comparative Study of State-Of-the-Art Poisson Solvers for Uniform and Nonuniform Grids in the Unit Cube. - Amir Gholami; Dhairya Malhotra; Hari Sundar; George Biros (SIAM J. Sci. Comput., 2016)

ASKIT: An Efficient, Parallel Library for High-Dimensional Kernel Summations. - William B. March; Bo Xiao 001; Chenhan D. Yu; George Biros (SIAM J. Sci. Comput., 2016)

Parallel Algorithms for Nearest Neighbor Search Problems in High Dimensions. - Bo Xiao 001; George Biros (SIAM J. Sci. Comput., 2016)

Algorithm 967: A Distributed-Memory Fast Multipole Method for Volume Potentials. - Dhairya Malhotra; George Biros (ACM Trans. Math. Softw., 2016)

An N log N Parallel Fast Direct Solver for Kernel Matrices. - Chenhan D. Yu; William B. March; George Biros (IPDPS, 2017)

A framework for scalable biophysics-based image analysis. - Amir Gholami; Andreas Mang; Klaudius Scheufele; Christos Davatzikos; Miriam Mehl; George Biros (SC, 2017)

Geometry-oblivious FMM for compressing dense SPD matrices. - Chenhan D. Yu; James Levitt; Severin Reiz; George Biros (SC, 2017)

A Semi-Lagrangian Two-Level Preconditioned Newton-Krylov Solver for Constrained Diffeomorphic Image Registration. - Andreas Mang; George Biros (SIAM J. Sci. Comput., 2017)

A Novel Domain Adaptation Framework for Medical Image Segmentation. - Amir Gholami; Shashank Subramanian; Varun Shenoy; Naveen Himthani; Xiangyu Yue 001; Sicheng Zhao; Peter H. Jin; George Biros; Kurt Keutzer (BrainLes@MICCAI (2), 2018)

Distributed-memory hierarchical compression of dense SPD matrices. - Chenhan D. Yu; Severin Reiz; George Biros (SC, 2018)

PDE-constrained optimization in medical image analysis. - Andreas Mang; Amir Gholami; Christos Davatzikos; George Biros (CoRR, 2018)

Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge. - Spyridon Bakas; Mauricio Reyes 001; András Jakab; Stefan Bauer; Markus Rempfler; Alessandro Crimi; Russell Takeshi Shinohara; Christoph Berger; Sung Min Ha; Martin Rozycki; Marcel Prastawa; Esther Alberts; et al. (CoRR, 2018)

Low-resolution simulations of vesicle suspensions in 2D. - Gökberk Kabacaoglu; Bryan D. Quaife; George Biros (J. Comput. Phys., 2018)

ANODE: Unconditionally Accurate Memory-Efficient Gradients for Neural ODEs. - Amir Gholaminejad; Kurt Keutzer; George Biros (IJCAI, 2019)

Distributed O(N) Linear Solver for Dense Symmetric Hierarchical Semi-Separable Matrices. - Chenhan D. Yu; Severin Reiz; George Biros (MCSoC, 2019)

ANODEV2: A Coupled Neural ODE Framework. - Tianjun Zhang; Zhewei Yao; Amir Gholami; Joseph E. Gonzalez; Kurt Keutzer; Michael W. Mahoney; George Biros (NeurIPS, 2019)

ANODEV2: A Coupled Neural ODE Evolution Framework. - Tianjun Zhang; Zhewei Yao; Amir Gholami; Kurt Keutzer; Joseph Gonzalez 001; George Biros; Michael W. Mahoney (CoRR, 2019)

Fast Evaluation and Approximation of the Gauss-Newton Hessian Matrix for the Multilayer Perceptron. - Chao Chen 008; Severin Reiz; Chenhan D. Yu; Hans-Joachim Bungartz; George Biros (CoRR, 2019)

CLAIRE: A Distributed-Memory Solver for Constrained Large Deformation Diffeomorphic Image Registration. - Andreas Mang; Amir Gholami; Christos Davatzikos; George Biros (SIAM J. Sci. Comput., 2019)

Estimating Glioblastoma Biophysical Growth Parameters Using Deep Learning Regression. - Sarthak Pati; Vaibhav Sharma; Heena Aslam; Siddhesh P. Thakur; Hamed Akbari; Andreas Mang; Shashank Subramanian; George Biros; Christos Davatzikos; Spyridon Bakas (BrainLes@MICCAI (1), 2020)

Multiatlas Calibration of Biophysical Brain Tumor Growth Models with Mass Effect. - Shashank Subramanian; Klaudius Scheufele; Naveen Himthani; George Biros (MICCAI (2), 2020)

Multi-node multi-GPU diffeomorphic image registration for large-scale imaging problems. - Malte Brunn; Naveen Himthani; George Biros; Miriam Mehl; Andreas Mang (SC, 2020)

An efficient method for modeling flow in porous media with immersed faults. - Youguang Chen; George Biros (CoRR, 2020)

Image-Driven Biophysical Tumor Growth Model Calibration. - Klaudius Scheufele; Shashank Subramanian; Andreas Mang; George Biros; Miriam Mehl (SIAM J. Sci. Comput., 2020)

A performance portability framework for Python. - Nader Al Awar; Steven Zhu; George Biros; Milos Gligoric 001 (ICS, 2021)

Quantitative in vivo imaging to enable tumor forecasting and treatment optimization. - Guillermo Lorenzo; David A. Hormuth II; Angela M. Jarrett; Ernesto A. B. F. Lima; Shashank Subramanian; George Biros; J. Tinsley Oden; Thomas J. R. Hughes; Thomas E. Yankeelov (CoRR, 2021)

Ensemble inversion for brain tumor growth models with mass effect. - Shashank Subramanian; Klaudius Scheufele; Naveen Himthani; Christos Davatzikos; George Biros (CoRR, 2021)

CLAIRE: Constrained Large Deformation Diffeomorphic Image Registration on Parallel Computing Architectures. - Malte Brunn; Naveen Himthani; George Biros; Miriam Mehl; Andreas Mang (J. Open Source Softw., 2021)

Fast GPU 3D diffeomorphic image registration. - Malte Brunn; Naveen Himthani; George Biros; Miriam Mehl; Andreas Mang (J. Parallel Distributed Comput., 2021)

Fast Approximation of the Gauss-Newton Hessian Matrix for the Multilayer Perceptron. - Chao Chen 008; Severin Reiz; Chenhan D. Yu; Hans-Joachim Bungartz; George Biros (SIAM J. Matrix Anal. Appl., 2021)

RCHOL: Randomized Cholesky Factorization for Solving SDD Linear Systems. - Chao Chen 008; Tianyu Liang; George Biros (SIAM J. Sci. Comput., 2021)

Modeling of Glioma Growth With Mass Effect by Longitudinal Magnetic Resonance Imaging. - Birkan Tunç; David A. Hormuth II; George Biros; Thomas E. Yankeelov (IEEE Trans. Biomed. Eng., 2021)

Fully Automatic Calibration of Tumor-Growth Models Using a Single mpMRI Scan. - Klaudius Scheufele; Shashank Subramanian; George Biros (IEEE Trans. Medical Imaging, 2021)

Hardware Accelerator Integration Tradeoffs for High-Performance Computing: A Case Study of GEMM Acceleration in N-Body Methods. - Mochamad Asri; Dhairya Malhotra; Jiajun Wang; George Biros; Lizy K. John; Andreas Gerstlauer (IEEE Trans. Parallel Distributed Syst., 2021)

PyKokkos: Performance Portable Kernels in Python. - Nader Al Awar; Neil Mehta; Steven Zhu; George Biros; Milos Gligoric 001 (ICSE-Companion, 2022)

A Multi-GPU Python Solver for Low-Temperature Non-Equilibrium Plasmas. - James Almgren-Bell; Nader Al Awar; Dilip S. Geethakrishnan; Milos Gligoric 001; George Biros (SBAC-PAD, 2022)

A GPU-Accelerated AMR Solver for Gravitational Wave Propagation. - Milinda Fernando; David Neilsen; Eric W. Hirschmann; Yosef Zlochower; Hari Sundar; Omar Ghattas; George Biros (SC, 2022)

Parla: A Python Orchestration System for Heterogeneous Architectures. - Hochan Lee; William Ruys; Ian Henriksen; Arthur Peters; Yineng Yan; Sean Stephens; Bozhi You; Henrique Fingler; Martin Burtscher; Milos Gligoric 001; Karl W. Schulz; Keshav Pingali; et al. (SC, 2022)

CLAIRE - Parallelized Diffeomorphic Image Registration for Large-Scale Biomedical Imaging Applications. - Naveen Himthani; Malte Brunn; Jae-Youn Kim; Miriam Schulte; Andreas Mang; George Biros (J. Imaging, 2022)

Overlapping Domain Decomposition Preconditioner for Integral Equations. - Chao Chen 008; George Biros (SIAM J. Sci. Comput., 2022)

A 3D Inverse Solver for a Multi-species PDE Model of Glioblastoma Growth. - Ali Ghafouri; George Biros (CMMCA@MICCAI, 2023)

A Two-Species Model for Abnormal Tau Dynamics in Alzheimer's Disease. - Zheyu Wen; Ali Ghafouri; George Biros (MTSAIL/LEAF/AI4Treat/MMMI/REMIA@MICCAI, 2023)

FIRAL: An Active Learning Algorithm for Multinomial Logistic Regression. - Youguang Chen; George Biros (NeurIPS, 2023)

A GPU Algorithm for Detecting Strongly Connected Components. - Ghadeer Alabandi; William Sands; George Biros; Martin Burtscher (SC, 2023)

A distributed-memory parallel algorithm for discretized integral equations using Julia. - Tianyu Liang; Chao Chen 008; Per-Gunnar Martinsson; George Biros (CoRR, 2023)

Inverse Biophysical Modeling and Machine Learning in Personalized Oncology (Dagstuhl Seminar 23022). - George Biros; Andreas Mang; Björn H. Menze; Miriam Schulte (Dagstuhl Reports, 2023)

Ensemble Inversion for Brain Tumor Growth Models With Mass Effect. - Shashank Subramanian; Ali Ghafouri; Klaudius Matthias Scheufele; Naveen Himthani; Christos Davatzikos; George Biros (IEEE Trans. Medical Imaging, 2023)

An O(N) distributed-memory parallel direct solver for planar integral equations. - Tianyu Liang; Chao Chen 008; Per-Gunnar Martinsson; George Biros (IPDPS, 2024)

A Deep Dive into Task-Based Parallelism in Python. - William Ruys; Hochan Lee; Bozhi You; Shreya Talati; Jaeyoung Park; James Almgren-Bell; Yineng Yan; Milinda Fernando; George Biros; Mattan Erez; Martin Burtscher; Christopher J. Rossbach; et al. (IPDPS (Workshops), 2024)

Single-Scan mpMRI Calibration of Multi-species Brain Tumor Dynamics with Mass Effect. - Ali Ghafouri; George Biros (SASHIMI@MICCAI, 2024)

Biophysics-Based Data Assimilation of Longitudinal Tau and Amyloid-β PET Scans. - Zheyu Wen; Ali Ghafouri; George Biros (MICCAI (4), 2024)

A Scalable Algorithm for Active Learning. - Youguang Chen; Zheyu Wen; George Biros (SC, 2024)

GrainGNN: A dynamic graph neural network for predicting 3D grain microstructure. - Yigong Qin; Stephen Dewitt; Balasubramanian Radhakrishnan; George Biros (CoRR, 2024)

Inverse Problem Regularization for 3D Multi-Species Tumor Growth Models. - Ali Ghafouri; George Biros (CoRR, 2024)

A fast solver for the spatially homogeneous electron Boltzmann equation. - Milinda Fernando; Daniil Bochkov; James Almgren-Bell; Todd A. Oliver; Robert D. Moser; Philip Varghese; Laxminarayan L. Raja; George Biros (CoRR, 2024)

Numerical simulation of an extensible capsule using regularized Stokes kernels and overset finite differences. - Dhwanit Agarwal; George Biros (J. Comput. Phys., 2024)

GrainGNN: A dynamic graph neural network for predicting 3D grain microstructure. - Yigong Qin; Stephen Dewitt; Balasubramaniam Radhakrishnan; George Biros (J. Comput. Phys., 2024)

Speeding up the Local C++ Development Cycle with Header Substitution. - Nader Al Awar; Zijian Yi; George Biros; Milos Gligoric 001 (CGO, 2025)

Aligning personalized biomarker trajectories onto a common time axis: a connectome-based ODE model for Tau-Amyloid beta dynamics. - Zheyu Wen; George Biros (Medical Image Anal., 2025)

Dynamically Fusing Python HPC Kernels. - Nader Al Awar; Muhammad Hannan Naeem; James Almgren-Bell; George Biros; Milos Gligoric 001 (Proc. ACM Softw. Eng., 2025)

Boltzsim: A fast solver for the 1D-space electron Boltzmann equation with applications to radio-frequency glow discharge plasmas. - Milinda Fernando; James Almgren-Bell; Todd A. Oliver; Robert D. Moser; Philip Varghese; Laxminarayan L. Raja; George Biros (CoRR, 2025)

Extensions of regret-minimization algorithm for optimal design. - Youguang Chen; George Biros (CoRR, 2025)

KNN-DBSCAN: a DBSCAN in high dimensions. - Youguang Chen; William Ruys; George Biros (ACM Trans. Parallel Comput., 2025)

Performance Characterization of Python Runtimes for Multi-device Task Parallel Programming. - William Ruys; Hochan Lee; Bozhi You; Shreya Talati; Jaeyoung Park; James Almgren-Bell; Yineng Yan; Milinda Fernando; Mattan Erez; Milos Gligoric 001; Martin Burtscher; Christopher J. Rossbach; et al. (Int. J. Parallel Program., 2025)

A Portable Multi-GPU Solver for Collisional Plasmas with Coulombic Interactions. - James Almgren-Bell; Nader Al Awar; Dilip S. Geethakrishnan; Milos Gligoric 001; George Biros (CoRR, 2025)

A single-snapshot inverse solver for two-species graph model of tau pathology spreading in human Alzheimer's disease. - Zheyu Wen; Ali Ghafouri; George Biros (Brain Informatics, 2025)