Pharokka: a fast scalable bacteriophage annotation tool. - George Bouras; Roshan Nepal; Ghais Houtak; Alkis James Psaltis; Peter-John Wormald; Sarah Vreugde (Bioinform., 2023)

Phables: from fragmented assemblies to high-quality bacteriophage genomes. - Vijini Mallawaarachchi; Michael J. Roach 001; Przemyslaw Decewicz; Bhavya Nalagampalli Papudeshi; Sarah K. Giles; Susanna R. Grigson; George Bouras; Ryan D. Hesse; Laura K. Inglis; Abbey L. K. Hutton; Elizabeth A. Dinsdale; Robert A. Edwards (Bioinform., 2023)

Solving genomic puzzles: computational methods for metagenomic binning. - Vijini Mallawaarachchi; Anuradha Wickramarachchi; Hansheng Xue; Bhavya Nalagampalli Papudeshi; Susanna R. Grigson; George Bouras; Rosa E. Prahl; Anubhav Kaphle; Andrey Verich; Berenice Talamantes-Becerra; Elizabeth A. Dinsdale; Robert A. Edwards (Briefings Bioinform., 2024)

Dnaapler: A tool to reorient circular microbial genomes. - George Bouras; Susanna R. Grigson; Bhavya Nalagampalli Papudeshi; Vijini Mallawaarachchi; Michael J. Roach 001 (J. Open Source Softw., 2024)

Koverage: Read-coverage analysis for massive (meta)genomics datasets. - Michael J. Roach 001; Bradley J. Hart; Sarah J. Beecroft; Bhavya Nalagampalli Papudeshi; Laura K. Inglis; Susanna R. Grigson; Vijini Mallawaarachchi; George Bouras; Robert A. Edwards (J. Open Source Softw., 2024)